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Report for CCDS75620.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
75620.1 Public Homo sapiens 7 CASTOR2 24 110 108 CCDS HistoryNCBI Gene:729438Re-query CCDS DB by CCDS ID:75620.1Re-query CCDS DB by GeneID:729438See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 75620.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000616305.2 ENSP00000484732.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000616305.2Link to Ensembl Protein Viewer:ENSP00000484732.1Re-query CCDS DB by Nucleotide ID:ENST00000616305Re-query CCDS DB by Protein ID:ENSP00000484732
Original member Current member NCBI NM_001145064.3 NP_001138536.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001145064.3Link to Protein Sequence:NP_001138536.1Re-query CCDS DB by Nucleotide ID:NM_001145064Re-query CCDS DB by Protein ID:NP_001138536Link to BLAST:NP_001138536.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001138536.1 329 A6NHX0 329 100% 0 0

Chromosomal Locations for CCDS 75620.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 74964986 74965098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 75007994 75008064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 75017598 75017791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 75017990 75018122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 75018972 75019095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 75020039 75020149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 75021874 75021956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 75024440 75024534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 75024634 75024699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (990 nt):
ATGGAACTCCACATCCTGGAGCACCGGCTGCAAGTTGCCAGCGTCGCCAAGGAGAGTATCCCGCTGTTCA
CCTACGGCCTGATCAAACTTGCCTTCCTGTCCTCCAAGACCAGGTGCAAGTTCTTCAGTCTGACTGAGAC
GCCAGAGGATTACACTATCATTGTCGATGAGGAAGGATTCCTAGAGCTGCCCTCCTCGGAGCACCTGAGT
GTGGCAGATGCCACCTGGCTGGCCCTGAACGTGGTGTCCGGCGGTGGCAGCTTCTCCAGCTCCCAGCCCA
TCGGCGTGACCAAGATCGCCAAGTCAGTCATCGCCCCACTGGCTGACCAGAACATATCCGTGTTCATGCT
GTCCACGTATCAGACAGACTTCATCCTGGTGCGCGAGCGGGACCTGCCCTTTGTCACCCACACATTGTCA
TCAGAGTTCACCATCCTGCGGGTCGTCAATGGCGAGACCGTGGCAGCCGAGAACCTCGGCATCACCAATG
GCTTCGTGAAGCCCAAGCTGGTCCAGAGGCCAGTCATCCACCCACTGTCCAGCCCGAGCAACAGGTTCTG
TGTCACCAGCCTGGACCCTGACACGCTGCCTGCTGTTGCCACACTCCTCATGGATGTCATGTTCTACTCC
AATGGAGTGAAGGACCCCATGGCCACTGGGGATGACTGCGGCCACATCCGCTTCTTCTCCTTCTCCCTCA
TCGAGGGCTACATCTCCCTGGTGATGGACGTGCAGACGCAGCAGAGGTTTCCTAGTAACTTGCTGTTCAC
AAGCGCATCCGGAGAGCTCTGGAAGATGGTCCGGATTGGAGGACAGCCCCTGGGGTTTGATGAGTGTGGC
ATCGTGGCCCAGATCTCAGAGCCCTTGGCTGCTGCAGACATCCCAGCCTACTACATCAGTACTTTCAAGT
TTGATCATGCACTTGTCCCCGAAGAGAACATCAATGGTGTCATCAGTGCCCTGAAGGTCAGCCAAGCAGA
GAAGCACTAG

Translation (329 aa):
MELHILEHRLQVASVAKESIPLFTYGLIKLAFLSSKTRCKFFSLTETPEDYTIIVDEEGFLELPSSEHLS
VADATWLALNVVSGGGSFSSSQPIGVTKIAKSVIAPLADQNISVFMLSTYQTDFILVRERDLPFVTHTLS
SEFTILRVVNGETVAAENLGITNGFVKPKLVQRPVIHPLSSPSNRFCVTSLDPDTLPAVATLLMDVMFYS
NGVKDPMATGDDCGHIRFFSFSLIEGYISLVMDVQTQQRFPSNLLFTSASGELWKMVRIGGQPLGFDECG
IVAQISEPLAAADIPAYYISTFKFDHALVPEENINGVISALKVSQAEKH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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