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Report for CCDS9947.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9947.1 Public Homo sapiens 14 VRK1 24 110 108 CCDS HistoryNCBI Gene:7443Re-query CCDS DB by CCDS ID:9947.1Re-query CCDS DB by GeneID:7443See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9947.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000216639.8 ENSP00000216639.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000216639.8Link to Ensembl Protein Viewer:ENSP00000216639.3Re-query CCDS DB by Nucleotide ID:ENST00000216639Re-query CCDS DB by Protein ID:ENSP00000216639
Original member Current member EBI ENST00000681344.1 ENSP00000506151.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000681344.1Link to Ensembl Protein Viewer:ENSP00000506151.1Re-query CCDS DB by Nucleotide ID:ENST00000681344Re-query CCDS DB by Protein ID:ENSP00000506151
Original member Current member EBI ENST00000681355.1 ENSP00000506214.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000681355.1Link to Ensembl Protein Viewer:ENSP00000506214.1Re-query CCDS DB by Nucleotide ID:ENST00000681355Re-query CCDS DB by Protein ID:ENSP00000506214
Original member Current member EBI ENST00000679816.1 ENSP00000506525.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000679816.1Link to Ensembl Protein Viewer:ENSP00000506525.1Re-query CCDS DB by Nucleotide ID:ENST00000679816Re-query CCDS DB by Protein ID:ENSP00000506525
Original member Current member EBI ENST00000680756.1 ENSP00000506648.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000680756.1Link to Ensembl Protein Viewer:ENSP00000506648.1Re-query CCDS DB by Nucleotide ID:ENST00000680756Re-query CCDS DB by Protein ID:ENSP00000506648
Original member Current member NCBI NM_003384.3 NP_003375.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003384.3Link to Protein Sequence:NP_003375.1Re-query CCDS DB by Nucleotide ID:NM_003384Re-query CCDS DB by Protein ID:NP_003375Link to BLAST:NP_003375.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003375.1 396 Q99986 396 100% 0 0

Chromosomal Locations for CCDS 9947.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 96833472 96833631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 96837762 96837817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 96846095 96846164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 96847257 96847344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 96852831 96852939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 96853074 96853166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 96855224 96855356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 96856130 96856250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 96856528 96856586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 96860557 96860735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 96876030 96876120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 96881177 96881208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1191 nt):
ATGCCTCGTGTAAAAGCAGCTCAAGCTGGAAGACAGAGCTCTGCAAAGAGACATCTTGCAGAACAATTTG
CAGTTGGAGAGATAATAACTGACATGGCAAAAAAGGAATGGAAAGTAGGATTACCCATTGGCCAAGGAGG
CTTTGGCTGTATATATCTTGCTGATATGAATTCTTCAGAGTCAGTTGGCAGTGATGCACCTTGTGTTGTA
AAAGTGGAACCCAGTGACAATGGACCTCTTTTTACTGAATTAAAGTTCTACCAACGAGCTGCAAAACCAG
AGCAAATTCAGAAATGGATTCGTACCCGTAAGCTGAAGTACCTGGGTGTTCCTAAGTATTGGGGGTCTGG
TCTACATGACAAAAATGGAAAAAGTTACAGGTTTATGATAATGGATCGCTTTGGGAGTGACCTTCAGAAA
ATATATGAAGCAAATGCCAAAAGGTTTTCTCGGAAAACTGTCTTGCAGCTAAGCTTAAGAATTCTGGATA
TTCTGGAATATATTCACGAGCATGAGTATGTGCATGGAGATATCAAGGCCTCAAATCTTCTTCTGAACTA
CAAGAATCCTGACCAGGTGTACTTGGTAGATTATGGCCTTGCTTATCGGTACTGCCCAGAAGGAGTTCAT
AAAGAATACAAAGAAGACCCCAAAAGATGTCACGATGGCACTATTGAATTCACGAGCATCGATGCACACA
ATGGCGTGGCCCCATCAAGACGTGGTGATTTGGAAATACTTGGTTATTGCATGATCCAATGGCTTACTGG
CCATCTTCCTTGGGAGGATAATTTGAAAGATCCTAAATATGTTAGAGATTCCAAAATTAGATACAGAGAA
AATATTGCAAGTTTGATGGACAAATGTTTTCCTGAGAAAAACAAACCAGGTGAAATTGCCAAATACATGG
AAACAGTGAAATTACTAGACTACACTGAAAAACCTCTTTATGAAAATTTACGTGACATTCTTTTGCAAGG
ACTAAAAGCTATAGGAAGTAAGGATGATGGCAAATTGGACCTCAGTGTTGTGGAGAATGGAGGTTTGAAA
GCAAAAACAATAACAAAGAAGCGAAAGAAAGAAATTGAAGAAAGCAAGGAACCTGGTGTTGAAGATACGG
AATGGTCAAACACACAGACAGAGGAGGCCATACAGACCCGTTCAAGAACCAGAAAGAGAGTCCAGAAGTA
A

Translation (396 aa):
MPRVKAAQAGRQSSAKRHLAEQFAVGEIITDMAKKEWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVV
KVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPKYWGSGLHDKNGKSYRFMIMDRFGSDLQK
IYEANAKRFSRKTVLQLSLRILDILEYIHEHEYVHGDIKASNLLLNYKNPDQVYLVDYGLAYRYCPEGVH
KEYKEDPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLTGHLPWEDNLKDPKYVRDSKIRYRE
NIASLMDKCFPEKNKPGEIAKYMETVKLLDYTEKPLYENLRDILLQGLKAIGSKDDGKLDLSVVENGGLK
AKTITKKRKKEIEESKEPGVEDTEWSNTQTEEAIQTRSRTRKRVQK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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