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Report for CCDS23855.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23855.1 Public Mus musculus 10 Pkib 23 108 98 CCDS HistoryNCBI Gene:18768Re-query CCDS DB by CCDS ID:23855.1Re-query CCDS DB by GeneID:18768See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23855.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000066028.12 ENSMUSP00000067532.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000066028.12Link to Ensembl Protein Viewer:ENSMUSP00000067532.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000066028Re-query CCDS DB by Protein ID:ENSMUSP00000067532
Original member Current member EBI ENSMUST00000075992.11 ENSMUSP00000075374.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000075992.11Link to Ensembl Protein Viewer:ENSMUSP00000075374.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000075992Re-query CCDS DB by Protein ID:ENSMUSP00000075374
Original member Current member EBI ENSMUST00000177325.7 ENSMUSP00000135280.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000177325.7Link to Ensembl Protein Viewer:ENSMUSP00000135280.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000177325Re-query CCDS DB by Protein ID:ENSMUSP00000135280
Original member Current member EBI ENSMUST00000175852.1 ENSMUSP00000135666.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000175852.1Link to Ensembl Protein Viewer:ENSMUSP00000135666.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000175852Re-query CCDS DB by Protein ID:ENSMUSP00000135666
Original member Current member EBI ENSMUST00000177473.7 ENSMUSP00000135835.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000177473.7Link to Ensembl Protein Viewer:ENSMUSP00000135835.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000177473Re-query CCDS DB by Protein ID:ENSMUSP00000135835
Original member Current member NCBI NM_001039050.1 NP_001034139.1 Accepted alive Link to Nucleotide Sequence:NM_001039050.1Link to Protein Sequence:NP_001034139.1Re-query CCDS DB by Nucleotide ID:NM_001039050Re-query CCDS DB by Protein ID:NP_001034139Link to BLAST:NP_001034139.1
Original member Current member NCBI NM_001039051.2 NP_001034140.1 Accepted alive Link to Nucleotide Sequence:NM_001039051.2Link to Protein Sequence:NP_001034140.1Re-query CCDS DB by Nucleotide ID:NM_001039051Re-query CCDS DB by Protein ID:NP_001034140Link to BLAST:NP_001034140.1
Original member Current member NCBI NM_001039052.1 NP_001034141.1 Accepted alive Link to Nucleotide Sequence:NM_001039052.1Link to Protein Sequence:NP_001034141.1Re-query CCDS DB by Nucleotide ID:NM_001039052Re-query CCDS DB by Protein ID:NP_001034141Link to BLAST:NP_001034141.1
Original member Current member NCBI NM_001039053.2 NP_001034142.2 Accepted alive Link to Nucleotide Sequence:NM_001039053.2Link to Protein Sequence:NP_001034142.2Re-query CCDS DB by Nucleotide ID:NM_001039053Re-query CCDS DB by Protein ID:NP_001034142Link to BLAST:NP_001034142.2
Original member Current member NCBI NM_001190402.1 NP_001177331.1 Accepted alive Link to Nucleotide Sequence:NM_001190402.1Link to Protein Sequence:NP_001177331.1Re-query CCDS DB by Nucleotide ID:NM_001190402Re-query CCDS DB by Protein ID:NP_001177331Link to BLAST:NP_001177331.1

Chromosomal Locations for CCDS 23855.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 57728098 57728266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 57736290 57736357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (237 nt):
ATGAGGACAGATTCATCAGAGATGACTGATGTGGAATCTGTGATCACCAGCTTTGCGTCCTCAGCAAGGG
CAGGCCGCCGCAATGCCTTACCCGACATCCAGAGTTCACTGGCTACAAGTGGATCCTCTGATCTTCCACT
GAAACTGGAAGCGTTGGCCGTGAAGGAAGATGCAAAAACGAAGAATGAAGAGAAAGACCAAGGCCAACCA
AAAACACCCCTAAATGAAGGAAAATGA

Translation (78 aa):
MRTDSSEMTDVESVITSFASSARAGRRNALPDIQSSLATSGSSDLPLKLEALAVKEDAKTKNEEKDQGQP
KTPLNEGK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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