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Report for CCDS73114.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
73114.1 Public Homo sapiens 10 PTPN20 24 110 108 CCDS HistoryNCBI Gene:26095Re-query CCDS DB by CCDS ID:73114.1Re-query CCDS DB by GeneID:26095See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 73114.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000374218.6 ENSP00000363335.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000374218.6Link to Ensembl Protein Viewer:ENSP00000363335.2Re-query CCDS DB by Nucleotide ID:ENST00000374218Re-query CCDS DB by Protein ID:ENSP00000363335
Original member Current member EBI ENST00000395721.6 ENSP00000379071.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000395721.6Link to Ensembl Protein Viewer:ENSP00000379071.2Re-query CCDS DB by Nucleotide ID:ENST00000395721Re-query CCDS DB by Protein ID:ENSP00000379071
Original member Current member EBI ENST00000506080.5 ENSP00000421921.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000506080.5Link to Ensembl Protein Viewer:ENSP00000421921.2Re-query CCDS DB by Nucleotide ID:ENST00000506080Re-query CCDS DB by Protein ID:ENSP00000421921
Original member Current member EBI ENST00000505814.5 ENSP00000426355.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000505814.5Link to Ensembl Protein Viewer:ENSP00000426355.1Re-query CCDS DB by Nucleotide ID:ENST00000505814Re-query CCDS DB by Protein ID:ENSP00000426355
Original member Current member NCBI NM_001042363.5 NP_001035822.1 Accepted alive Link to Nucleotide Sequence:NM_001042363.5Link to Protein Sequence:NP_001035822.1Re-query CCDS DB by Nucleotide ID:NM_001042363Re-query CCDS DB by Protein ID:NP_001035822Link to BLAST:NP_001035822.1
Original member Current member NCBI NM_001320681.2 NP_001307610.1 Accepted alive Link to Nucleotide Sequence:NM_001320681.2Link to Protein Sequence:NP_001307610.1Re-query CCDS DB by Nucleotide ID:NM_001320681Re-query CCDS DB by Protein ID:NP_001307610Link to BLAST:NP_001307610.1
Original member Current member NCBI NM_001320686.2 NP_001307615.1 Accepted alive Link to Nucleotide Sequence:NM_001320686.2Link to Protein Sequence:NP_001307615.1Re-query CCDS DB by Nucleotide ID:NM_001320686Re-query CCDS DB by Protein ID:NP_001307615Link to BLAST:NP_001307615.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001035822.1 339 Q4JDL3-4 339 100% 0 0
NP_001307610.1 339 Q4JDL3-4 339 100% 0 0
NP_001307615.1 339 Q4JDL3-4 339 100% 0 0

Chromosomal Locations for CCDS 73114.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 46946579 46946675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 46964986 46965137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 46967957 46968047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 46984230 46984564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 46987340 46987555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 46999912 46999974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 47000676 47000741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1020 nt):
ATGTGGACAGCCAGAGGCCCCTTCAGAAGAGACAGGTGGAGCAGTGAGGATGAGGAGGCTGCAGGGCCAT
CACAGGCTCTCTCCCCTCTACTTTCTGATACGCGCAAAATTGTTTCTGAAGGAGAACTAGATCAGTTGGC
TCAGATTCGGCCATTAATATTCAATTTTCATGAGCAGACAGCCATCAAGGATTGTTTGAAAATCCTTGAG
GAAAAAACAGCAGCGTATGATATCATGCAGGAATTTATGGCTTTAGAACTTAAGAATCTGCCTGGTGAGT
TCAACTCTGGGAATCAACCAAGCAACAGAGAAAAAAATAGATACCGAGATATTCTTCCATATGATTCAAC
ACGCGTTCCTCTTGGAAAAAGCAAGGACTACATCAATGCTAGTTATATTAGAATAGTCAATTGTGGAGAA
GAGTATTTTTATATCGCTACTCAAGGACCACTGCTGAGCACCATAGATGACTTTTGGCAAATGGTGTTGG
AAAATAATTCAAATGTTATTGCCATGATAACCAGAGAGATAGAAGGTGGAATTATCAAATGCTACCATTA
CTGGCCCATTTCTCTGAAGAAGCCATTGGAATTGAAACACTTCCGTGTATTCCTGGAGAACTACCAGATA
CTTCAATATTTCATCATTCGAATGTTTCAAGTTGTGGAGAAGTCCACGGGAACTAGTCACTCTGTAAAAC
AGTTGCAGTTCACCAAGTGGCCAGACCATGGCACTCCTGCCTCAGCAGATAGCTTCATAAAATATATTCG
TTATGCAAGGAAGAGCCACCTTACAGGACCCATGGTTGTTCACTGCAGTGCCGGCATAGGCCGGACAGGG
GTGTTCCTATGTGTGGATGTCGTGTTCTGTGCCATCGTAAAGAACTGTTCATTCAACATCATGGATATAG
TGGCCCAAATGAGAGAACAACGTTCTGGCATGGTTCAAACGAAGGAGCAGTATCACTTTTGTTACGATAT
TGTGCTTGAAGTTCTTCGGAAACTTCTGACTTTGGATTAA

Translation (339 aa):
MWTARGPFRRDRWSSEDEEAAGPSQALSPLLSDTRKIVSEGELDQLAQIRPLIFNFHEQTAIKDCLKILE
EKTAAYDIMQEFMALELKNLPGEFNSGNQPSNREKNRYRDILPYDSTRVPLGKSKDYINASYIRIVNCGE
EYFYIATQGPLLSTIDDFWQMVLENNSNVIAMITREIEGGIIKCYHYWPISLKKPLELKHFRVFLENYQI
LQYFIIRMFQVVEKSTGTSHSVKQLQFTKWPDHGTPASADSFIKYIRYARKSHLTGPMVVHCSAGIGRTG
VFLCVDVVFCAIVKNCSFNIMDIVAQMREQRSGMVQTKEQYHFCYDIVLEVLRKLLTLD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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