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Report for CCDS21205.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21205.1 Public Mus musculus 7 Syt3 23 108 98 CCDS HistoryNCBI Gene:20981Re-query CCDS DB by CCDS ID:21205.1Re-query CCDS DB by GeneID:20981See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21205.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000118831.7 ENSMUSP00000112432.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000118831.7Link to Ensembl Protein Viewer:ENSMUSP00000112432.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000118831Re-query CCDS DB by Protein ID:ENSMUSP00000112432
Original member Current member EBI ENSMUST00000120262.1 ENSMUSP00000112968.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000120262.1Link to Ensembl Protein Viewer:ENSMUSP00000112968.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000120262Re-query CCDS DB by Protein ID:ENSMUSP00000112968
Original member Current member EBI ENSMUST00000118962.7 ENSMUSP00000114070.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000118962.7Link to Ensembl Protein Viewer:ENSMUSP00000114070.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000118962Re-query CCDS DB by Protein ID:ENSMUSP00000114070
Original member NCBI NM_001114116.1 NP_001107588.1 Updated not alive Link to Nucleotide Sequence:NM_001114116.1Link to Protein Sequence:NP_001107588.1Re-query CCDS DB by Nucleotide ID:NM_001114116Re-query CCDS DB by Protein ID:NP_001107588
Current member NCBI NM_001114116.2 NP_001107588.1 Accepted alive Link to Nucleotide Sequence:NM_001114116.2Link to Protein Sequence:NP_001107588.1Re-query CCDS DB by Nucleotide ID:NM_001114116Re-query CCDS DB by Protein ID:NP_001107588Link to BLAST:NP_001107588.1
Original member NCBI NM_016663.3 NP_057872.3 Updated not alive Link to Nucleotide Sequence:NM_016663.3Link to Protein Sequence:NP_057872.3Re-query CCDS DB by Nucleotide ID:NM_016663Re-query CCDS DB by Protein ID:NP_057872
Current member NCBI NM_016663.4 NP_057872.3 Accepted alive Link to Nucleotide Sequence:NM_016663.4Link to Protein Sequence:NP_057872.3Re-query CCDS DB by Nucleotide ID:NM_016663Re-query CCDS DB by Protein ID:NP_057872Link to BLAST:NP_057872.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001107588.1 587 O35681 587 99.8296% 0 1
NP_057872.3 587 O35681 587 99.8296% 0 1

Chromosomal Locations for CCDS 21205.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 44385971 44386121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44390496 44391024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44392399 44392771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44393349 44393567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44395410 44395530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44395639 44395810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44395903 44396035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44399086 44399151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1764 nt):
ATGTCTGGGGACTATGAAGATGACCTCTGTCGGCGGGCGCTCATCCTGGTCTCAGACCTCTGTGCACGGG
TCCGAGATGCTGATACCAATGATAGGTGTCAAGAGTTCAACGAACTGCGGATCAGAGGATATCCCCGGGG
TCCGGATGCAGATATTTCCGTGAGCCTGCTGTCAGTCATCGTGACATTCTGTGGCATCGTCCTCTTGGGT
GTCTCCCTCTTCGTGTCCTGGAAGTTGTGCTGGGTGCCCTGGAGGGACAAAGGAGGCTCAGCAGTGGGTG
GTGGCCCCCTGCGCAAAGACTTAGCCCCTGGGGTTGGGCTGGCAGGCCTGGTAGGAGGTGGTGGGCACCA
CCTAGGAGCCAGCCTCGGTGGTCATCCCCTGCTGGGTGGCCCACACCATCATGGGCACACAGCCCACCAT
CCACCATTTGCGGAGCTGCTGGAACCAGGTGGTCTTGGGGGCTCTGAGCCGCCAGAACCTTCCTACCTGG
ACATGGACTCATATCCAGAGGCTGCTGTGGCCTCTGTGGTAGCTGCTGGAGTCAAACCAAGCCAGACATC
CCCTGAGCTGCCTTCTGAGGGTGGAACAGGTTCTGGGCTGCTCCTGCTGCCTCCCAGTGGTGGGGGCTTA
CCCAGTGCCCAGTCTCATCAGCAGGTCACAAGTCTAGCACCCACCACAAGGTACCCAGCCCTGCCTCGGC
CCCTCACCCAGCAGACCCTGACCACCCAAGCAGACCCAAGCACTGAGGAGCGACCGCCTGCACTGCCCTT
ACCTCTGCCGGGTGGAGAGGAAAAAGCCAAGCTCATCGGTCAGATCAAACCAGAGCTGTACCAGGGCACT
GGACCCGGTGGTCGGCGAGGCGGGGGCTCAGGGGAAGCAGGGGCACCCTGTGGCCGCATCAGTTTTGCCC
TCCGGTACCTCTATGGTTCTGACCAGCTCGTGGTGCGGATCCTACAGGCCCTGGATCTCCCAGCAAAGGA
CTCCAATGGGTTCTCAGACCCCTACGTCAAGATCTACCTGTTGCCTGATCGCAAAAAGAAGTTCCAGACC
AAGGTGCACAGGAAGACGTTGAACCCCATCTTCAACGAGACGTTTCAGTTCTCGGTGCCCCTGGCCGAGC
TGGCACAGCGCAAGCTGCACTTCAGCGTCTATGACTTCGACCGCTTCTCGCGGCATGATCTCATTGGCCA
GGTGGTTTTGGACAACCTGCTGGAGCTGGCTGAACAGCCCCCTGACCGCCCGCTCTGGAGGGACATCCTG
GAGGGTGGCTCGGAAAAGGCAGATCTCGGAGAGCTCAACTTCTCTCTCTGCTACCTCCCCACGGCTGGGC
GCCTCACCGTGACCATCATCAAAGCCTCTAACCTCAAAGCAATGGACCTCACTGGTTTCTCAGACCCCTA
TGTGAAGGCCTCTCTGATCAGCGAGGGGCGGCGTCTGAAGAAACGGAAGACCTCCATTAAGAAGAACACA
CTGAACCCCACGTACAACGAGGCCCTGGTGTTCGACGTGGCTCCCGAGAGCGTGGAGAACGTGGGTCTCA
GCATCGCAGTGGTAGACTATGACTGCATCGGCCACAATGAAGTGATCGGGGTGTGCCGCGTGGGTCCAGA
GGCTGCCGACCCACACGGCAGAGAACACTGGGCAGAGATGCTGGCTAACCCGCGCAAGCCTGTGGAACAC
TGGCACCAGCTAGTGGAGGAGAAGACTCTGAGCAGCTTCACAAAGGGTGGCAAAGGATTGTCAGAGAAAG
AGAATTCAGAGTGA

Translation (587 aa):
MSGDYEDDLCRRALILVSDLCARVRDADTNDRCQEFNELRIRGYPRGPDADISVSLLSVIVTFCGIVLLG
VSLFVSWKLCWVPWRDKGGSAVGGGPLRKDLAPGVGLAGLVGGGGHHLGASLGGHPLLGGPHHHGHTAHH
PPFAELLEPGGLGGSEPPEPSYLDMDSYPEAAVASVVAAGVKPSQTSPELPSEGGTGSGLLLLPPSGGGL
PSAQSHQQVTSLAPTTRYPALPRPLTQQTLTTQADPSTEERPPALPLPLPGGEEKAKLIGQIKPELYQGT
GPGGRRGGGSGEAGAPCGRISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQT
KVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDIL
EGGSEKADLGELNFSLCYLPTAGRLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNT
LNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEH
WHQLVEEKTLSSFTKGGKGLSEKENSE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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