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Report for CCDS28126.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28126.1 Public Mus musculus 16 Rpl35a 23 108 98 CCDS HistoryNCBI Gene:57808Re-query CCDS DB by CCDS ID:28126.1Re-query CCDS DB by GeneID:57808See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28126.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000078804.11 ENSMUSP00000077857.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000078804.11Link to Ensembl Protein Viewer:ENSMUSP00000077857.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000078804Re-query CCDS DB by Protein ID:ENSMUSP00000077857
Original member Current member EBI ENSMUST00000115075.1 ENSMUSP00000110727.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115075.1Link to Ensembl Protein Viewer:ENSMUSP00000110727.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000115075Re-query CCDS DB by Protein ID:ENSMUSP00000110727
Original member Current member EBI ENSMUST00000115076.7 ENSMUSP00000110728.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115076.7Link to Ensembl Protein Viewer:ENSMUSP00000110728.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000115076Re-query CCDS DB by Protein ID:ENSMUSP00000110728
Original member Current member EBI ENSMUST00000115078.7 ENSMUSP00000110730.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115078.7Link to Ensembl Protein Viewer:ENSMUSP00000110730.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000115078Re-query CCDS DB by Protein ID:ENSMUSP00000110730
Original member Current member EBI ENSMUST00000115079.7 ENSMUSP00000110731.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115079.7Link to Ensembl Protein Viewer:ENSMUSP00000110731.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000115079Re-query CCDS DB by Protein ID:ENSMUSP00000110731
Original member Current member NCBI NM_001130484.1 NP_001123956.1 Accepted alive Link to Nucleotide Sequence:NM_001130484.1Link to Protein Sequence:NP_001123956.1Re-query CCDS DB by Nucleotide ID:NM_001130484Re-query CCDS DB by Protein ID:NP_001123956Link to BLAST:NP_001123956.1
Original member Current member NCBI NM_001130485.1 NP_001123957.1 Accepted alive Link to Nucleotide Sequence:NM_001130485.1Link to Protein Sequence:NP_001123957.1Re-query CCDS DB by Nucleotide ID:NM_001130485Re-query CCDS DB by Protein ID:NP_001123957Link to BLAST:NP_001123957.1
Original member Current member NCBI NM_021338.3 NP_067313.2 Accepted alive Link to Nucleotide Sequence:NM_021338.3Link to Protein Sequence:NP_067313.2Re-query CCDS DB by Nucleotide ID:NM_021338Re-query CCDS DB by Protein ID:NP_067313Link to BLAST:NP_067313.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001123956.1 110 O55142 110 100% 0 0
NP_001123957.1 110 O55142 110 100% 0 0
NP_067313.2 110 O55142 110 100% 0 0

Chromosomal Locations for CCDS 28126.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 33057168 33057178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33057390 33057542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33058679 33058823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33060098 33060121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (333 nt):
ATGTCTGGAAGGCTGTGGTGCAAGGCCATTTTTGCTGGCTACAAGCGAGGTCTCCGGAACCAAAGAGAGC
ACACGGCTCTTCTTAAAATTGAAGGCGTTTATGCCCGAGATGAAACGGAGTTCTACTTAGGCAAGAGATG
TGCTTATGTGTATAAGGCAAAAAACAATACAGTGACTCCTGGAGGTAAACCAAACAAAACCAGAGTGATC
TGGGGAAAGGTAACTCGGGCCCACGGAAACAGCGGTATGGTTCGTGCCAAATTCCGAAGCAACCTTCCTG
CAAAGGCCATTGGACACAGAATCCGTGTGATGCTGTACCCATCCCGGATTTAA

Translation (110 aa):
MSGRLWCKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGKPNKTRVI
WGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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