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Report for CCDS54555.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54555.1 Public Homo sapiens 3 C3orf20 24 110 108 CCDS HistoryNCBI Gene:84077Re-query CCDS DB by CCDS ID:54555.1Re-query CCDS DB by GeneID:84077See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54555.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000412910.1 ENSP00000396081.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000412910.1Link to Ensembl Protein Viewer:ENSP00000396081.1Re-query CCDS DB by Nucleotide ID:ENST00000412910Re-query CCDS DB by Protein ID:ENSP00000396081
Original member Current member EBI ENST00000435614.5 ENSP00000402933.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000435614.5Link to Ensembl Protein Viewer:ENSP00000402933.1Re-query CCDS DB by Nucleotide ID:ENST00000435614Re-query CCDS DB by Protein ID:ENSP00000402933
Original member Current member NCBI NM_001184957.2 NP_001171886.1 Accepted alive Link to Nucleotide Sequence:NM_001184957.2Link to Protein Sequence:NP_001171886.1Re-query CCDS DB by Nucleotide ID:NM_001184957Re-query CCDS DB by Protein ID:NP_001171886Link to BLAST:NP_001171886.1
Original member Current member NCBI NM_001184958.2 NP_001171887.1 Accepted alive Link to Nucleotide Sequence:NM_001184958.2Link to Protein Sequence:NP_001171887.1Re-query CCDS DB by Nucleotide ID:NM_001184958Re-query CCDS DB by Protein ID:NP_001171887Link to BLAST:NP_001171887.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001171886.1 782 Q8ND61-2 782 100% 0 0
NP_001171887.1 782 Q8ND61-2 782 100% 0 0

Chromosomal Locations for CCDS 54555.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 14683080 14683197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14684242 14684382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14689997 14690116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14703130 14703262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14704337 14704618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14714007 14714159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14715289 14715409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14721653 14721784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14726901 14727024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14728439 14728688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14757371 14757674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14759891 14759998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14761473 14761615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14772067 14772201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14772791 14772875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2349 nt):
ATGGCCCGTCAGGTGCGCACCCACCAGGAGACCCTGAACAGGTTTCAGCAGCAGTCCATCCACCTGCTGA
CGGAGCTCCTCAGACTGAAGATGAAGGCCATGGTGGAGTCTATGTCGGTGGGTGCCAACCCCTTGGACAT
CACCAGGCGCTTTGTGGAGGCCAGCCAGCTCCTCCACCTCAATGCCAAGGAGATGGCCTTCAACTGCCTG
ATCAGCACAGCCGGGAGAAGTGGCTACAGCAGCGGACAGTTGTGGAAAGAGTCCCTCGCAAACATGTCCG
CCATTGGGGTGAACTCGCCTTACCAGCTGATCTACCACTCTTCCACAGCCTGTCTGAGCTTTTCTCTCTC
TGCTGGAAAAGAAGCCAAGAAGAAAATAGGCAAATCTAGAACTACAGAAGATGTCAGCATGCCGCCCCTG
CATCGAGGAGTGGGAACCCCTGCCAACAGCCTGGAGTTCAGCGACCCCTGCCCTGAGGCCCGGGAGAAGC
TGCAGGAGTTGTGTCGCCACATAGAAGCTGAAAGGGCCACATGGAAAGGGAGGAATATCTCCTACCCCAT
GATCTTACGAAACTACAAGGCAAAGATGCCCTCTCATCTAATGTTGGCCCGCAAAGGAGACTCTCAGACC
CCGGGTTTACATTACCCTCCCACTGCAGGTGCTCAGACTCTCAGCCCCACCTCTCACCCATCTTCTGCCA
ACCATCATTTCAGTCAGCATTGTCAAGAGGGGAAGGCACCCAAGAAGGCCTTCAAGTTTCATTACACCTT
CTATGATGGCTCCTCCTTCGTTTACTATCCCTCTGGAAACGTCGCTGTATGTCAGATCCCCACATGCTGC
AGAGGGAGAACCATCACCTGCCTCTTTAATGACATACCTGGATTCTCCTTGCTGGCCCTATTCAATACTG
AAGGCCAGGGCTGTGTTCACTACAACCTAAAAACCAGTTGCCCATATGTCTTAATCTTGGATGAGGAAGG
TGGGACCACCAATGACCAGCAGGGCTATGTAGTCCACAAGTGGAGCTGGACTTCCAGGACAGAGACCCTG
CTTTCCCTGGAATACAAGGTGAATGAGGAAATGAAACTAAAGGTACTGGGACAGGACTCCATCACAGTCA
CCTTCACCTCCCTGAATGAGACAGTAACACTCACTGTGTCGGCCAACAATTGTCCCCATGGAATGGCATA
TGACAAACGGCTGAACCGCAGAATCAGCAACATGGACGACAAGGTGTATAAGATGAGCCGAGCCCTGGCT
GAGATCAAGAAGCGGTTTCAGAAGACAGTGACTCAGTTCATTAATTCTATCTTGCTGGCCGCAGGTCTGT
TTACCATTGAATATCCCACCAAAAAGGAGGAGGAAGAATTTGTTCGGTTCAAGATGAGATCCAGAACTCA
TCCCGAGCGGCTCCCCAAGCTAAGTTTATACTCAGGAGAAAGTCTTTTACGATCTCAGTCAGGCCACCTG
GAATCCTCAATTGCAGAGACTTTGAAGGATGAGCCTGAGTCTGCTCCTGTGAGCCCAGTTCGGAAGACCA
CCAAAATCCACACCAAAGCCAAGGTCACATCCAGAGGGAAGGCCCGCGAGGGGCGCAGCCCCACCAGGTG
GGCGGCCTTGCCCTCAGACTGCCCGCTGGTGCTGCGGAAGCTCATGCTCAAGGAAGACACCCGTGCTGGC
TGCAAGTGCCTGGTGAAGGCGCCCCTGGTCTCTGACGTGGAGCTGGAGCGCTTCCTGTTGGCGCCCCGAG
ACCCCAGCCAAGTGCTGGTGTTTGGGATCATCTCAAGCCAGAACTACACCAGCACTGGGCAGCTCCAGTG
GCTGCTGAACACTCTCTACAACCACCAGCAGCGGGGCCGTGGCTCCCCCTGCATCCAGTGCCGGTATGAC
TCCTACCGCCTGCTGCAGTATGACCTGGACAGCCCCCTGCAGGAGGACCCTCCCCTGATGGTGAAGAAGA
ACTCTGTGGTGCAGGGGATGATTCTGATGTTTGCCGGGGGGAAGCTCATTTTTGGGGGCCGTGTTTTGAA
TGGATATGGCCTCAGCAAGCAGAATCTGCTGAAACAGATCTTCCGGTCTCAACAGGATTACAAGATGGGC
TACTTCCTGCCGGATGACTACAAATTCAGTGTTCCCAACTCTGTCCTGAGCCTGGAGGATTCTGAATCAG
TCAAGAAAGCCGAGTCAGAAGATATCCAAGGAAGCAGCTCCTCATTGGCCCTGGAAGACTATGTGGAGAA
GGAGTTATCTCTGGAGGCTGAGAAGACAAGAGAGCCTGAAGTGGAGCTACATCCTCTCAGCAGGGACAGC
AAGATAACTAGTTGGAAGAAGCAGGCCTCCAAGAAGTAG

Translation (782 aa):
MARQVRTHQETLNRFQQQSIHLLTELLRLKMKAMVESMSVGANPLDITRRFVEASQLLHLNAKEMAFNCL
ISTAGRSGYSSGQLWKESLANMSAIGVNSPYQLIYHSSTACLSFSLSAGKEAKKKIGKSRTTEDVSMPPL
HRGVGTPANSLEFSDPCPEAREKLQELCRHIEAERATWKGRNISYPMILRNYKAKMPSHLMLARKGDSQT
PGLHYPPTAGAQTLSPTSHPSSANHHFSQHCQEGKAPKKAFKFHYTFYDGSSFVYYPSGNVAVCQIPTCC
RGRTITCLFNDIPGFSLLALFNTEGQGCVHYNLKTSCPYVLILDEEGGTTNDQQGYVVHKWSWTSRTETL
LSLEYKVNEEMKLKVLGQDSITVTFTSLNETVTLTVSANNCPHGMAYDKRLNRRISNMDDKVYKMSRALA
EIKKRFQKTVTQFINSILLAAGLFTIEYPTKKEEEEFVRFKMRSRTHPERLPKLSLYSGESLLRSQSGHL
ESSIAETLKDEPESAPVSPVRKTTKIHTKAKVTSRGKAREGRSPTRWAALPSDCPLVLRKLMLKEDTRAG
CKCLVKAPLVSDVELERFLLAPRDPSQVLVFGIISSQNYTSTGQLQWLLNTLYNHQQRGRGSPCIQCRYD
SYRLLQYDLDSPLQEDPPLMVKKNSVVQGMILMFAGGKLIFGGRVLNGYGLSKQNLLKQIFRSQQDYKMG
YFLPDDYKFSVPNSVLSLEDSESVKKAESEDIQGSSSSLALEDYVEKELSLEAEKTREPEVELHPLSRDS
KITSWKKQASKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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