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Report for CCDS3940.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3940.1 Public Homo sapiens 5 GHR 24 110 108 CCDS HistoryNCBI Gene:2690Re-query CCDS DB by CCDS ID:3940.1Re-query CCDS DB by GeneID:2690See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3940.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000230882.9 ENSP00000230882.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000230882.9Link to Ensembl Protein Viewer:ENSP00000230882.4Re-query CCDS DB by Nucleotide ID:ENST00000230882Re-query CCDS DB by Protein ID:ENSP00000230882
Original member Current member EBI ENST00000537449.5 ENSP00000442206.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000537449.5Link to Ensembl Protein Viewer:ENSP00000442206.2Re-query CCDS DB by Nucleotide ID:ENST00000537449Re-query CCDS DB by Protein ID:ENSP00000442206
Original member Current member EBI ENST00000615111.4 ENSP00000478291.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000615111.4Link to Ensembl Protein Viewer:ENSP00000478291.1Re-query CCDS DB by Nucleotide ID:ENST00000615111Re-query CCDS DB by Protein ID:ENSP00000478291
Original member Current member EBI ENST00000612382.4 ENSP00000478332.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000612382.4Link to Ensembl Protein Viewer:ENSP00000478332.1Re-query CCDS DB by Nucleotide ID:ENST00000612382Re-query CCDS DB by Protein ID:ENSP00000478332
Original member Current member EBI ENST00000612626.4 ENSP00000479846.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000612626.4Link to Ensembl Protein Viewer:ENSP00000479846.1Re-query CCDS DB by Nucleotide ID:ENST00000612626Re-query CCDS DB by Protein ID:ENSP00000479846
Original member Current member EBI ENST00000618088.4 ENSP00000482373.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000618088.4Link to Ensembl Protein Viewer:ENSP00000482373.1Re-query CCDS DB by Nucleotide ID:ENST00000618088Re-query CCDS DB by Protein ID:ENSP00000482373
Original member Current member NCBI NM_000163.5 NP_000154.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_000163.5Link to Protein Sequence:NP_000154.1Re-query CCDS DB by Nucleotide ID:NM_000163Re-query CCDS DB by Protein ID:NP_000154Link to BLAST:NP_000154.1
Original member Current member NCBI NM_001242400.2 NP_001229329.1 Accepted alive Link to Nucleotide Sequence:NM_001242400.2Link to Protein Sequence:NP_001229329.1Re-query CCDS DB by Nucleotide ID:NM_001242400Re-query CCDS DB by Protein ID:NP_001229329Link to BLAST:NP_001229329.1
Original member Current member NCBI NM_001242401.4 NP_001229330.1 Accepted alive Link to Nucleotide Sequence:NM_001242401.4Link to Protein Sequence:NP_001229330.1Re-query CCDS DB by Nucleotide ID:NM_001242401Re-query CCDS DB by Protein ID:NP_001229330Link to BLAST:NP_001229330.1
Original member Current member NCBI NM_001242402.2 NP_001229331.1 Accepted alive Link to Nucleotide Sequence:NM_001242402.2Link to Protein Sequence:NP_001229331.1Re-query CCDS DB by Nucleotide ID:NM_001242402Re-query CCDS DB by Protein ID:NP_001229331Link to BLAST:NP_001229331.1
Original member Current member NCBI NM_001242403.3 NP_001229332.1 Accepted alive Link to Nucleotide Sequence:NM_001242403.3Link to Protein Sequence:NP_001229332.1Re-query CCDS DB by Nucleotide ID:NM_001242403Re-query CCDS DB by Protein ID:NP_001229332Link to BLAST:NP_001229332.1
Original member Current member NCBI NM_001242404.2 NP_001229333.1 Accepted alive Link to Nucleotide Sequence:NM_001242404.2Link to Protein Sequence:NP_001229333.1Re-query CCDS DB by Nucleotide ID:NM_001242404Re-query CCDS DB by Protein ID:NP_001229333Link to BLAST:NP_001229333.1
Original member Current member NCBI NM_001242405.2 NP_001229334.1 Accepted alive Link to Nucleotide Sequence:NM_001242405.2Link to Protein Sequence:NP_001229334.1Re-query CCDS DB by Nucleotide ID:NM_001242405Re-query CCDS DB by Protein ID:NP_001229334Link to BLAST:NP_001229334.1
Original member Current member NCBI NM_001242406.2 NP_001229335.1 Accepted alive Link to Nucleotide Sequence:NM_001242406.2Link to Protein Sequence:NP_001229335.1Re-query CCDS DB by Nucleotide ID:NM_001242406Re-query CCDS DB by Protein ID:NP_001229335Link to BLAST:NP_001229335.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000154.1 638 P10912-1 638 100% 0 0
NP_001229329.1 638 P10912-1 638 100% 0 0
NP_001229330.1 638 P10912-1 638 100% 0 0
NP_001229331.1 638 P10912-1 638 100% 0 0
NP_001229332.1 638 P10912-1 638 100% 0 0
NP_001229333.1 638 P10912-1 638 100% 0 0
NP_001229334.1 638 P10912-1 638 100% 0 0
NP_001229335.1 638 P10912-1 638 100% 0 0

Chromosomal Locations for CCDS 3940.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 42565875 42565944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 42629038 42629103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 42688890 42689019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 42694917 42695089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 42699824 42700002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 42711207 42711372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 42713429 42713519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 42718052 42718121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 42718453 42719424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1917 nt):
ATGGATCTCTGGCAGCTGCTGTTGACCTTGGCACTGGCAGGATCAAGTGATGCTTTTTCTGGAAGTGAGG
CCACAGCAGCTATCCTTAGCAGAGCACCCTGGAGTCTGCAAAGTGTTAATCCAGGCCTAAAGACAAATTC
TTCTAAGGAGCCTAAATTCACCAAGTGCCGTTCACCTGAGCGAGAGACTTTTTCATGCCACTGGACAGAT
GAGGTTCATCATGGTACAAAGAACCTAGGACCCATACAGCTGTTCTATACCAGAAGGAACACTCAAGAAT
GGACTCAAGAATGGAAAGAATGCCCTGATTATGTTTCTGCTGGGGAAAACAGCTGTTACTTTAATTCATC
GTTTACCTCCATCTGGATACCTTATTGTATCAAGCTAACTAGCAATGGTGGTACAGTGGATGAAAAGTGT
TTCTCTGTTGATGAAATAGTGCAACCAGATCCACCCATTGCCCTCAACTGGACTTTACTGAACGTCAGTT
TAACTGGGATTCATGCAGATATCCAAGTGAGATGGGAAGCACCACGCAATGCAGATATTCAGAAAGGATG
GATGGTTCTGGAGTATGAACTTCAATACAAAGAAGTAAATGAAACTAAATGGAAAATGATGGACCCTATA
TTGACAACATCAGTTCCAGTGTACTCATTGAAAGTGGATAAGGAATATGAAGTGCGTGTGAGATCCAAAC
AACGAAACTCTGGAAATTATGGCGAGTTCAGTGAGGTGCTCTATGTAACACTTCCTCAGATGAGCCAATT
TACATGTGAAGAAGATTTCTACTTTCCATGGCTCTTAATTATTATCTTTGGAATATTTGGGCTAACAGTG
ATGCTATTTGTATTCTTATTTTCTAAACAGCAAAGGATTAAAATGCTGATTCTGCCCCCAGTTCCAGTTC
CAAAGATTAAAGGAATCGATCCAGATCTCCTCAAGGAAGGAAAATTAGAGGAGGTGAACACAATCTTAGC
CATTCATGATAGCTATAAACCCGAATTCCACAGTGATGACTCTTGGGTTGAATTTATTGAGCTAGATATT
GATGAGCCAGATGAAAAGACTGAGGAATCAGACACAGACAGACTTCTAAGCAGTGACCATGAGAAATCAC
ATAGTAACCTAGGGGTGAAGGATGGCGACTCTGGACGTACCAGCTGTTGTGAACCTGACATTCTGGAGAC
TGATTTCAATGCCAATGACATACATGAGGGTACCTCAGAGGTTGCTCAGCCACAGAGGTTAAAAGGGGAA
GCAGATCTCTTATGCCTTGACCAGAAGAATCAAAATAACTCACCTTATCATGATGCTTGCCCTGCTACTC
AGCAGCCCAGTGTTATCCAAGCAGAGAAAAACAAACCACAACCACTTCCTACTGAAGGAGCTGAGTCAAC
TCACCAAGCTGCCCATATTCAGCTAAGCAATCCAAGTTCACTGTCAAACATCGACTTTTATGCCCAGGTG
AGCGACATTACACCAGCAGGTAGTGTGGTCCTTTCCCCGGGCCAAAAGAATAAGGCAGGGATGTCCCAAT
GTGACATGCACCCGGAAATGGTCTCACTCTGCCAAGAAAACTTCCTTATGGACAATGCCTACTTCTGTGA
GGCAGATGCCAAAAAGTGCATCCCTGTGGCTCCTCACATCAAGGTTGAATCACACATACAGCCAAGCTTA
AACCAAGAGGACATTTACATCACCACAGAAAGCCTTACCACTGCTGCTGGGAGGCCTGGGACAGGAGAAC
ATGTTCCAGGTTCTGAGATGCCTGTCCCAGACTATACCTCCATTCATATAGTACAGTCCCCACAGGGCCT
CATACTCAATGCGACTGCCTTGCCCTTGCCTGACAAAGAGTTTCTCTCATCATGTGGCTATGTGAGCACA
GACCAACTGAACAAAATCATGCCTTAG

Translation (638 aa):
MDLWQLLLTLALAGSSDAFSGSEATAAILSRAPWSLQSVNPGLKTNSSKEPKFTKCRSPERETFSCHWTD
EVHHGTKNLGPIQLFYTRRNTQEWTQEWKECPDYVSAGENSCYFNSSFTSIWIPYCIKLTSNGGTVDEKC
FSVDEIVQPDPPIALNWTLLNVSLTGIHADIQVRWEAPRNADIQKGWMVLEYELQYKEVNETKWKMMDPI
LTTSVPVYSLKVDKEYEVRVRSKQRNSGNYGEFSEVLYVTLPQMSQFTCEEDFYFPWLLIIIFGIFGLTV
MLFVFLFSKQQRIKMLILPPVPVPKIKGIDPDLLKEGKLEEVNTILAIHDSYKPEFHSDDSWVEFIELDI
DEPDEKTEESDTDRLLSSDHEKSHSNLGVKDGDSGRTSCCEPDILETDFNANDIHEGTSEVAQPQRLKGE
ADLLCLDQKNQNNSPYHDACPATQQPSVIQAEKNKPQPLPTEGAESTHQAAHIQLSNPSSLSNIDFYAQV
SDITPAGSVVLSPGQKNKAGMSQCDMHPEMVSLCQENFLMDNAYFCEADAKKCIPVAPHIKVESHIQPSL
NQEDIYITTESLTTAAGRPGTGEHVPGSEMPVPDYTSIHIVQSPQGLILNATALPLPDKEFLSSCGYVST
DQLNKIMP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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