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Report for CCDS38218.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38218.1 Public Mus musculus 2 Wdr76 23 108 98 CCDS HistoryNCBI Gene:241627Re-query CCDS DB by CCDS ID:38218.1Re-query CCDS DB by GeneID:241627See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38218.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028676.11 ENSMUSP00000028676.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028676.11Link to Ensembl Protein Viewer:ENSMUSP00000028676.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000028676Re-query CCDS DB by Protein ID:ENSMUSP00000028676
Original member Current member EBI ENSMUST00000110602.8 ENSMUSP00000106232.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110602.8Link to Ensembl Protein Viewer:ENSMUSP00000106232.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000110602Re-query CCDS DB by Protein ID:ENSMUSP00000106232
Original member Current member NCBI NM_001290986.1 NP_001277915.1 Accepted alive Link to Nucleotide Sequence:NM_001290986.1Link to Protein Sequence:NP_001277915.1Re-query CCDS DB by Nucleotide ID:NM_001290986Re-query CCDS DB by Protein ID:NP_001277915Link to BLAST:NP_001277915.1
Original member Current member NCBI NM_030234.2 NP_084510.2 Accepted alive Link to Nucleotide Sequence:NM_030234.2Link to Protein Sequence:NP_084510.2Re-query CCDS DB by Nucleotide ID:NM_030234Re-query CCDS DB by Protein ID:NP_084510Link to BLAST:NP_084510.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001277915.1 524 A6PWY4-2 524 100% 0 0
NP_084510.2 524 A6PWY4-2 524 100% 0 0

Chromosomal Locations for CCDS 38218.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 121510770 121510925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121517705 121517797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121519418 121519473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121525452 121525581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121526802 121526903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121527002 121527045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121528811 121528964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121531286 121531441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121534108 121534322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121535424 121535576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121537107 121537160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121542301 121542562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1575 nt):
ATGAAGGCCTTATCTTCCAAGGCAGATTCCCTTCTGCTGAAATCATCCGTGGATGCTTATACTGAAAGTA
CCAGGCTGGGACCCAAGAGGACCTCGGATTCAGCGACTCTCAGTGTGGACGCGGAAAGCAGCGACGAAGA
CAGTGCACCAGGCCTGGATGATTTTTCAGGATTGTCACCTTATGAAAGGAAGAGACTGAGGAACATCAGA
GAAAATGCAAACTTTTTTGCTTCCCTTCAGTTAGCTGAGTCGGCTGCACGGCTCCGTGGGATGATAAAGA
AGCGCGAGTCACCTGAGTCAAAGAGAAAGAGGCCTAAGAAGAAAGAAAATGAAATTGGATGTCGAAGGTC
CATGCGGTTGTTGAAAGTAGACCCTTTGGGAGTTTCATTACCAGCATCTCCAACACAGCCAACATTAGTA
GAAGAAGAAGAAAATCCTTTGTTACCTCCTGGACCCTTAGAAATGATTCCTGAAAACCAAGATGACAGCA
GTGAACTGTTGAAAGCATCTTTGAAGACATGGGCAGAGATGAGCCAGACAAGTAATGAGAAGACCAAGAA
GGGGCTGTCTAGTATTAAAAGCTATAAAGCCAATTTAAGTGGCATGGTCATCAGTGAGGCTACTGTTCGT
AAGGTGACCAAAGGAGCAATCTCCTCCGTGGCCCTCCACCCATCAGAAGTGAGAACCTTGGTAGCAGCTG
GGGCCAAGTCTGGACAAATTGGACTTTGGGATTTGACCCAGCAGAGTGAAGATGCGATGTACGTTTTCTA
TGCTCACAGTCGGTATGTTAGCTGCCTCTCCTTCTCACCCACCAACCCAGCCCATCTACTGTCCCTGAGC
TATGACGGCACACTGCGATGTGGTGATTTTTCCAGCGCTGTGTTTGAGGAGGTGTACAGGAATGAGGGAA
ACAGCCCGTCCTCCTTTGACTTCTTGAACGATTCCTCCAGTCTGCTAGTGGGACACTGGGATGGACATTT
GTCACTGGTAGATAGACGGACACCTGGAACTTCTTATGAGAAGTTTTTTAATTCATCTTTGGAAAAAATA
AGAACTGTTCATGTCCACCCACTATCCAGACAGTATTTTGTCACAGCAGGATTGAGGGACGTTCATGTTT
ACGATGCCAGGTTCCTGAAGTCCAGGGGAAGCCAGCCTCTGATTTCCTTGACTGAGCACTCGAAAAGCAT
TGCCTCTGCATATTTCTCCCCCGTTACTGGTAACAGAGTGGTGACTACATGTGCTGACTGTAAGCTCAGG
GTCTTTGACAGCAGCTCCATATCTTCCCAGCTTCCTCTCCTCAGTACCATCAGGCACAACACTGTCACTG
GGAGGTGGCTAACGAGGTTCCAGGCTGTGTGGGACCCTAAACAAGAAGATTGCTTCATAGTTGGTAGCAT
GGACCACCCACGACGGGTGGAAGTCTTCCACGAGTCGGGAAAGAATGTGCATTCTCTTTGGGGAGAATGT
CTTGTATCTGTGTGTTCCCTCAGTGCTGTGCATCCTACGCGATATATCCTGGCTGGAGGTAATTCCAGTG
GCAAGTTACATGTTTTTATGCATCAAGAAACCTGA

Translation (524 aa):
MKALSSKADSLLLKSSVDAYTESTRLGPKRTSDSATLSVDAESSDEDSAPGLDDFSGLSPYERKRLRNIR
ENANFFASLQLAESAARLRGMIKKRESPESKRKRPKKKENEIGCRRSMRLLKVDPLGVSLPASPTQPTLV
EEEENPLLPPGPLEMIPENQDDSSELLKASLKTWAEMSQTSNEKTKKGLSSIKSYKANLSGMVISEATVR
KVTKGAISSVALHPSEVRTLVAAGAKSGQIGLWDLTQQSEDAMYVFYAHSRYVSCLSFSPTNPAHLLSLS
YDGTLRCGDFSSAVFEEVYRNEGNSPSSFDFLNDSSSLLVGHWDGHLSLVDRRTPGTSYEKFFNSSLEKI
RTVHVHPLSRQYFVTAGLRDVHVYDARFLKSRGSQPLISLTEHSKSIASAYFSPVTGNRVVTTCADCKLR
VFDSSSISSQLPLLSTIRHNTVTGRWLTRFQAVWDPKQEDCFIVGSMDHPRRVEVFHESGKNVHSLWGEC
LVSVCSLSAVHPTRYILAGGNSSGKLHVFMHQET


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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