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Report for CCDS35428.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35428.1 Public Homo sapiens X HMGB3 24 110 108 CCDS HistoryNCBI Gene:3149Re-query CCDS DB by CCDS ID:35428.1Re-query CCDS DB by GeneID:3149See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35428.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000325307.12 ENSP00000359393.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000325307.12Link to Ensembl Protein Viewer:ENSP00000359393.3Re-query CCDS DB by Nucleotide ID:ENST00000325307Re-query CCDS DB by Protein ID:ENSP00000359393
Original member Current member EBI ENST00000448905.6 ENSP00000442758.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000448905.6Link to Ensembl Protein Viewer:ENSP00000442758.1Re-query CCDS DB by Nucleotide ID:ENST00000448905Re-query CCDS DB by Protein ID:ENSP00000442758
Original member Current member NCBI NM_001301228.2 NP_001288157.1 Accepted alive Link to Nucleotide Sequence:NM_001301228.2Link to Protein Sequence:NP_001288157.1Re-query CCDS DB by Nucleotide ID:NM_001301228Re-query CCDS DB by Protein ID:NP_001288157Link to BLAST:NP_001288157.1
Original member Current member NCBI NM_001301229.2 NP_001288158.1 Accepted alive Link to Nucleotide Sequence:NM_001301229.2Link to Protein Sequence:NP_001288158.1Re-query CCDS DB by Nucleotide ID:NM_001301229Re-query CCDS DB by Protein ID:NP_001288158Link to BLAST:NP_001288158.1
Original member Current member NCBI NM_005342.4 NP_005333.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005342.4Link to Protein Sequence:NP_005333.2Re-query CCDS DB by Nucleotide ID:NM_005342Re-query CCDS DB by Protein ID:NP_005333Link to BLAST:NP_005333.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001288157.1 200 O15347 200 100% 0 0
NP_001288158.1 200 O15347 200 100% 0 0
NP_005333.2 200 O15347 200 100% 0 0

Chromosomal Locations for CCDS 35428.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 150985600 150985749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 150986051 150986190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 150987128 150987302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 150987777 150987914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (603 nt):
ATGGCTAAAGGTGACCCCAAGAAACCAAAGGGCAAGATGTCCGCTTATGCCTTCTTTGTGCAGACATGCA
GAGAAGAACATAAGAAGAAAAACCCAGAGGTCCCTGTCAATTTTGCGGAATTTTCCAAGAAGTGCTCTGA
GAGGTGGAAGACGATGTCCGGGAAAGAGAAATCTAAATTTGATGAAATGGCAAAGGCAGATAAAGTGCGC
TATGATCGGGAAATGAAGGATTATGGACCAGCTAAGGGAGGCAAGAAGAAGAAGGATCCTAATGCTCCCA
AAAGGCCACCGTCTGGATTCTTCCTGTTCTGTTCAGAATTCCGCCCCAAGATCAAATCCACAAACCCCGG
CATCTCTATTGGAGACGTGGCAAAAAAGCTGGGTGAGATGTGGAATAATTTAAATGACAGTGAAAAGCAG
CCTTACATCACTAAGGCGGCAAAGCTGAAGGAGAAGTATGAGAAGGATGTTGCTGACTATAAGTCGAAAG
GAAAGTTTGATGGTGCAAAGGGTCCTGCTAAAGTTGCCCGGAAAAAGGTGGAAGAGGAAGATGAAGAAGA
GGAGGAGGAAGAAGAGGAGGAGGAGGAGGAGGAGGATGAATAA

Translation (200 aa):
MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVR
YDREMKDYGPAKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQ
PYITKAAKLKEKYEKDVADYKSKGKFDGAKGPAKVARKKVEEEDEEEEEEEEEEEEEEDE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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