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Report for CCDS81105.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
81105.1 Public Mus musculus X Klhl13 23 108 98 CCDS HistoryNCBI Gene:67455Re-query CCDS DB by CCDS ID:81105.1Re-query CCDS DB by GeneID:67455See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 81105.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115316.8 ENSMUSP00000110971.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115316.8Link to Ensembl Protein Viewer:ENSMUSP00000110971.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000115316Re-query CCDS DB by Protein ID:ENSMUSP00000110971
Original member Current member NCBI NM_001310466.1 NP_001297395.1 Accepted alive Link to Nucleotide Sequence:NM_001310466.1Link to Protein Sequence:NP_001297395.1Re-query CCDS DB by Nucleotide ID:NM_001310466Re-query CCDS DB by Protein ID:NP_001297395Link to BLAST:NP_001297395.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001297395.1 640 Q80TF4-4 640 100% 0 0

Chromosomal Locations for CCDS 81105.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 23220365 23220852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 23228574 23228687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 23235226 23236021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 23247361 23247557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 23248112 23248244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 23261435 23261573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 23266685 23266740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1923 nt):
ATGGAGGGAGAGTACTTCTTTGAAGAAAACCCCTTTCTTGAATTCCTTTTAAAACTATCACTTGTGGAAG
AGGAAGACCAGCACTTGAAACTGTGCCTTGGAAGTGAAATGGGCCTCTCTTCCCATTTGCAGTCTTGCAA
GGCAGGAAGTACACGCATCTTTACCAGCAACAGCCACAGTTCTGTGGTGTTACAGGGCTTTGACCAGCTT
CGGCTTGATGGATTGCTTTGTGATGTGACACTGATGCCAGGTGATACAGATGATGCTTACCCTGTGCACA
GAGTCATGATGGCATCTGCTAGTGACTACTTCAAAGCTATGTTCACAGGTGGAATGAAAGAACAAGAGCT
GATGTGCATTAAGCTTCATGGCGTGAGCAGAGTGGGTCTACGGAAAATTATTGATTTCATCTATACTGCA
AAGCTTTCTCTTAACATGGACACCCTTCAGGATACGCTGGAAGCCGCCAGCTTTCTTCAGATTCTTCCGG
TTTTAGACTTCTGCAAAGTGTTTCTCATATCTGGGGTCACTTTGGATAACTGTGTTGAAGTTGGACGGAT
TGCCAACACCTACCATCTGACAGAAGTGGATAAATATGTCAACAGCTTCGTCTTAAAGAATTTTGCTGCA
TTGCTGAGCACTGGGGAGTTCCTGAAGCTTCCCTTCGAGCGCCTTGCCTTTGTCCTGTCCAGCAACAGCC
TTAAGCGCTGCACCGAACTTGACCTCTTCAAAGCTACCTGTCGCTGGCTTCGCCTGGAAGAACCTAGAAT
GGACGTTGCTGCAAAACTAATGAAGAATATACGATTTCCGCTGATGACACCACAGGAGCTCATTAATTAT
GTGCAAACCGTGGATTTCATGAGAACTGACAATACTTGCGTCAATTTGCTTCTGGAAGCCAGCAATTACC
AAATGATGCCGTTTATGCAGCCAGTTATGCAGTCAGACAGGACTGCCATTCGGTCTGACACCACTCGTTT
GGTTACACTCGGAGGAGTCCTGAGACAGCAGCTTGTCGTCAGTAAAGAATTGCGCATGTATGATGAAAAG
ACCCACGAGTGGAAATCTCTAGCCCCCATGGATGCCCCAAGATACCAGCATGGCATTGCTGTCATCGGAA
ATTTTCTCTACGTTGTTGGTGGGCAGAGTAATTATGACACAAAAGGAAAAACCGCCGTCGATACAGTGTT
TAGATTTGATCCTCGATACAACAAATGGATCCAAGTTGCATCTTTAAATGAAAAGCGCACCTTCTTCCAC
CTAAGTGCCCTCAAAGGATTTCTGTATGCAGTTGGTGGACGAAATGCAGCTGGAGAACTCCCTACTGTGG
AATGTTACAATCCGAGAACAAATGAATGGACCTATGTTGCCAAAATGAATGAACCTCACTATGGCCATGC
TGGAACTGTGTATGGAGGAGTGATGTATATTTCAGGAGGAATTACCCATGACACTTTCCAAAAGGAGCTC
ATGTGCTTCGACCCTGATACTGACAAATGGACCCAGAAGGCACCGATGACCACTGTCCGAGGCCTACACT
GCATGTGTACGGTGGGAGATAGGCTCTACGTCATTGGTGGCAACCATTTCCGAGGAACCAGTGATTATGA
TGATGTCCTGAGCTGTGAATACTACTCACCTATCCTTGACCAGTGGACCCCAATTGCTTCCATGTTAAGA
GGGCAGAGTGATGTTGGGGTCGCTGTCTTTGAGAATAAAATCTATGTGGTTGGTGGCTATTCATGGAATA
ATCGCTGTATGGTAGAGATAGTGCAGAAGTATGATCCAGAGAAAAATGAATGGCATAAGGTTTTCGATCT
GCCAGAGTCTCTTGGTGGTATTCGAGCTTGTACACTTACAGTTTATCCACCTGAAGAAGCCACACCATCA
CCTTCTAGAGAGTCCCCTCTTTCTGGACCCTAA

Translation (640 aa):
MEGEYFFEENPFLEFLLKLSLVEEEDQHLKLCLGSEMGLSSHLQSCKAGSTRIFTSNSHSSVVLQGFDQL
RLDGLLCDVTLMPGDTDDAYPVHRVMMASASDYFKAMFTGGMKEQELMCIKLHGVSRVGLRKIIDFIYTA
KLSLNMDTLQDTLEAASFLQILPVLDFCKVFLISGVTLDNCVEVGRIANTYHLTEVDKYVNSFVLKNFAA
LLSTGEFLKLPFERLAFVLSSNSLKRCTELDLFKATCRWLRLEEPRMDVAAKLMKNIRFPLMTPQELINY
VQTVDFMRTDNTCVNLLLEASNYQMMPFMQPVMQSDRTAIRSDTTRLVTLGGVLRQQLVVSKELRMYDEK
THEWKSLAPMDAPRYQHGIAVIGNFLYVVGGQSNYDTKGKTAVDTVFRFDPRYNKWIQVASLNEKRTFFH
LSALKGFLYAVGGRNAAGELPTVECYNPRTNEWTYVAKMNEPHYGHAGTVYGGVMYISGGITHDTFQKEL
MCFDPDTDKWTQKAPMTTVRGLHCMCTVGDRLYVIGGNHFRGTSDYDDVLSCEYYSPILDQWTPIASMLR
GQSDVGVAVFENKIYVVGGYSWNNRCMVEIVQKYDPEKNEWHKVFDLPESLGGIRACTLTVYPPEEATPS
PSRESPLSGP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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