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Report for CCDS25001.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25001.1 Public Mus musculus 11 Ctns 23 108 98 CCDS HistoryNCBI Gene:83429Re-query CCDS DB by CCDS ID:25001.1Re-query CCDS DB by GeneID:83429See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25001.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000006103.8 ENSMUSP00000006103.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000006103.8Link to Ensembl Protein Viewer:ENSMUSP00000006103.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000006103Re-query CCDS DB by Protein ID:ENSMUSP00000006103
Original member Current member EBI ENSMUST00000108476.7 ENSMUSP00000104116.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108476.7Link to Ensembl Protein Viewer:ENSMUSP00000104116.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108476Re-query CCDS DB by Protein ID:ENSMUSP00000104116
Original member Current member NCBI NM_001357891.1 NP_001344820.1 Accepted alive Link to Nucleotide Sequence:NM_001357891.1Link to Protein Sequence:NP_001344820.1Re-query CCDS DB by Nucleotide ID:NM_001357891Re-query CCDS DB by Protein ID:NP_001344820Link to BLAST:NP_001344820.1
Original member Current member NCBI NM_001357892.1 NP_001344821.1 Accepted alive Link to Nucleotide Sequence:NM_001357892.1Link to Protein Sequence:NP_001344821.1Re-query CCDS DB by Nucleotide ID:NM_001357892Re-query CCDS DB by Protein ID:NP_001344821Link to BLAST:NP_001344821.1
Original member Current member NCBI NM_031251.4 NP_112541.1 Accepted alive Link to Nucleotide Sequence:NM_031251.4Link to Protein Sequence:NP_112541.1Re-query CCDS DB by Nucleotide ID:NM_031251Re-query CCDS DB by Protein ID:NP_112541Link to BLAST:NP_112541.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001344820.1 367 P57757 367 100% 0 0
NP_001344821.1 367 P57757 367 100% 0 0
NP_112541.1 367 P57757 367 100% 0 0

Chromosomal Locations for CCDS 25001.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 73184918 73185051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73185238 73185355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73186289 73186459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73187522 73187641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73187737 73187836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73188430 73188561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73188689 73188792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73191678 73191762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73193055 73193133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73196638 73196698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1104 nt):
ATGAGGAGGAATTGGCTGCTTATTTTGACCCTTTTTCTCTTGATGTTCATAGAGAAGTATGAGTCAACTG
TCAGTCTCACTGCTCCTCCCACCGTGAAGCTGGAAAATGGCAGTTCAACCAACGTCGACATCACCCTTGG
GCATCCACTAAATTCGACCTTGGTGATCACTTTTGAAGTCACGTTTCGCTCAAAAAATCTGACTATTGTG
GAGCTTCCTGATGAAGTTATAGTGCCTCGCGGAGAGAAAAATGCCTCTTTCCAAGTGACTTCTCAAAATA
TTGGACAAGTGACTGTTTTTCTGCATGGAAATCATTCCAACCAGACCTGCCCCAGGATCCGGTTCTTGGT
GATACACAGCAGAATCGTTAGCATCATAAACCAGGTGATTGGCTGGATCTACTTCATGGCGTGGTCTGTC
TCCTTTTACCCACAAGTGATCCAGAACTGGAGACGGAAAAGTGTCATTGGTCTCAGCTTTGATTTCTTGG
CCCTGAACTTGACGGGCTTCGTGGCCTACAGTGTTTTCAACATCGGTCTTTTGTGGGTGCCCTATATCCA
GGAGGAGTTTCTCCTCAAATACCCCAATGGTGTGAACCCCGTCGACAGTAATGATGCCTTCTTCAGCTTG
CATGCTGTCGCCCTCACCCTGATTGTCATCCTGCAGTGCTGCCTGTATGAGCGAGGCAACCAGCGTGTGT
CATGGCCCTCCATTGGCTTCCTGGTACTCGCATGGCTCTTTGTCCTAGTCACCATGATTGTGGCTGCAGT
CGGTATCACCACATGGCTCCAGTTCCTCTTCTGCTTCTCCTACATCAAGCTCATCATCACACTGATCAAG
TATTTCCCACAGGCCTATATGAACTTCTACTACAAAAGCACCAAGGGCTGGAGCATTGGCGGTGTGCTCC
TCGATTTTACAGGGGGCAGCTTTAGCCTCCTCCAGATGTTCCTCCAGTCTTACAATAATGACCAATGGAC
ATTGATCTTCGGAGACCCAACCAAGTTCGGACTTGGCGTCTTCACCATCTTCTTTGATGTTGTCTTCTTC
ATCCAGCACTTCTACTTGTACAGAAAGAAACCAGGGTACGACCAGTTGAATTAG

Translation (367 aa):
MRRNWLLILTLFLLMFIEKYESTVSLTAPPTVKLENGSSTNVDITLGHPLNSTLVITFEVTFRSKNLTIV
ELPDEVIVPRGEKNASFQVTSQNIGQVTVFLHGNHSNQTCPRIRFLVIHSRIVSIINQVIGWIYFMAWSV
SFYPQVIQNWRRKSVIGLSFDFLALNLTGFVAYSVFNIGLLWVPYIQEEFLLKYPNGVNPVDSNDAFFSL
HAVALTLIVILQCCLYERGNQRVSWPSIGFLVLAWLFVLVTMIVAAVGITTWLQFLFCFSYIKLIITLIK
YFPQAYMNFYYKSTKGWSIGGVLLDFTGGSFSLLQMFLQSYNNDQWTLIFGDPTKFGLGVFTIFFDVVFF
IQHFYLYRKKPGYDQLN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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