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Report for CCDS20025.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20025.1 Public Mus musculus 6 Ndufb2 23 108 98 CCDS HistoryNCBI Gene:68198Re-query CCDS DB by CCDS ID:20025.1Re-query CCDS DB by GeneID:68198See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20025.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000119379.1 ENSMUSP00000114095.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000119379.1Link to Ensembl Protein Viewer:ENSMUSP00000114095.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000119379Re-query CCDS DB by Protein ID:ENSMUSP00000114095
Original member Current member EBI ENSMUST00000135671.7 ENSMUSP00000118918.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000135671.7Link to Ensembl Protein Viewer:ENSMUSP00000118918.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000135671Re-query CCDS DB by Protein ID:ENSMUSP00000118918
Original member Current member NCBI NM_001358797.1 NP_001345726.1 Accepted alive Link to Nucleotide Sequence:NM_001358797.1Link to Protein Sequence:NP_001345726.1Re-query CCDS DB by Nucleotide ID:NM_001358797Re-query CCDS DB by Protein ID:NP_001345726Link to BLAST:NP_001345726.1
Original member Current member NCBI NM_026612.4 NP_080888.1 Accepted alive Link to Nucleotide Sequence:NM_026612.4Link to Protein Sequence:NP_080888.1Re-query CCDS DB by Nucleotide ID:NM_026612Re-query CCDS DB by Protein ID:NP_080888Link to BLAST:NP_080888.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001345726.1 105 Q9CPU2 105 100% 0 0
NP_080888.1 105 Q9CPU2 105 100% 0 0

Chromosomal Locations for CCDS 20025.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 39592615 39592712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 39596451 39596595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 39598266 39598340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (318 nt):
ATGTCTGCGCTCACCCGTCTGGTACCTTTCGGCCGCGTCGGAGGCCGCCTGCTCCGGGGCTGCCGCGCGC
GGGCGGCTGGAGACAGTGGAGTCCGTCACGCTGGCGGTGGTGTACATATTCAGCCCCGGTACAGGGAGTT
TCCCCAGCTTACCCGGTCCCAGGTGATCCAGGGTGAGTTCTTAAGCTCACTCATGTGGTTCTGGATTCTT
TGGCGATTTTGGCATGACTCGGATGCTGTGCTGGGTCACTTTTCATATCCAGATCCTTCACAGTGGACAG
ATGAAGAACTGGGAATCCCTCCTGATGACGAGGACTGA

Translation (105 aa):
MSALTRLVPFGRVGGRLLRGCRARAAGDSGVRHAGGGVHIQPRYREFPQLTRSQVIQGEFLSSLMWFWIL
WRFWHDSDAVLGHFSYPDPSQWTDEELGIPPDDED


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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