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Report for CCDS40731.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40731.1 Public Mus musculus 9 Zbtb38 23 108 98 CCDS HistoryNCBI Gene:245007Re-query CCDS DB by CCDS ID:40731.1Re-query CCDS DB by GeneID:245007See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40731.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000093798.8 ENSMUSP00000091315.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000093798.8Link to Ensembl Protein Viewer:ENSMUSP00000091315.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000093798Re-query CCDS DB by Protein ID:ENSMUSP00000091315
Original member Current member EBI ENSMUST00000152594.7 ENSMUSP00000121753.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000152594.7Link to Ensembl Protein Viewer:ENSMUSP00000121753.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000152594Re-query CCDS DB by Protein ID:ENSMUSP00000121753
Original member Current member NCBI NM_001359959.1 NP_001346888.1 Accepted alive Link to Nucleotide Sequence:NM_001359959.1Link to Protein Sequence:NP_001346888.1Re-query CCDS DB by Nucleotide ID:NM_001359959Re-query CCDS DB by Protein ID:NP_001346888Link to BLAST:NP_001346888.1
Original member Current member NCBI NM_001359960.1 NP_001346889.1 Accepted alive Link to Nucleotide Sequence:NM_001359960.1Link to Protein Sequence:NP_001346889.1Re-query CCDS DB by Nucleotide ID:NM_001359960Re-query CCDS DB by Protein ID:NP_001346889Link to BLAST:NP_001346889.1
Original member Current member NCBI NM_175537.3 NP_780746.2 Accepted alive Link to Nucleotide Sequence:NM_175537.3Link to Protein Sequence:NP_780746.2Re-query CCDS DB by Nucleotide ID:NM_175537Re-query CCDS DB by Protein ID:NP_780746Link to BLAST:NP_780746.2

Chromosomal Locations for CCDS 40731.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 96685436 96689029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3594 nt):
ATGACAGTCATGTCCCTCTCCAGGGACCTCAAGGACGACTTTCACAGTGACACAGTACTCTCCATCTTAA
ATGAGCAGCGCATTCGGGGCATCTTATGTGATGTCACCATCATCGTGGAAGACACCAAGTTTAAAGCCCA
CAGCAATGTCCTGGCCGCCTCAAGTCTTTATTTCAAAAACATCTTTTGGAGCCATACGATCTGCATTTCC
AGTCACGTCTTGGAGCTGGATGATCTGAAAGCCGAAGTGTTTACAGAAATACTTAATTATATCTACAGCT
CTACCGTTGTGGTCAAAAGACAGGAAACCGTCACTGATCTTGCAGCTGCAGGGAAAAAGCTGGGAATATC
ATTCTTAGAAGACCTTAGTGACCGCAACTTCTCAAATTCCCCAGGTCCTTACGTAGTCTGCATTACTGAA
AAGGGAGTGGTTAAAGAAGAAAAAAATGAGAAAAGGCACGAAGAACCAGCTGTCACTAATGGGCCAAGGA
TCACAAACGCGTTTTCCATCATTGAGACGGAAAATAGTAATAACATGTTTTCTCCCCTGGACTTGAGAGC
AAGCTTCAAAAAGGTGTCTGATTCCATGAGGACAGCCAGCCTTTGCCAGGAGAGAGCCAGCGTCTGCCAT
GAGGTAGAGCCTGTCCGCACGCTTGCTGAGCACTCGTATGCCGTCTCGTCCATCACTGAGGCCTACAGGA
GTCAGCCTCCGAGGGAACAGGACAGCAGCTCATCTGCTAAAACAGGAAAAGAAACTGGTGATGCTCTTGC
CACAAAAGCGAAGCCATGCCGAAAGCCAAAGCCCCAAACCCAGGATTCTGACTCAACCACAGAAAATATG
CCACTCTCTCTAGTAACCTGCCCAGAGGTGAATCAAGAAAGAAGCCCACAGCCAGCTCCAGATCTGTCAC
ACTCAGAGCCTCCCAGCAATGAAGGGGATATCCATTTTCCCAGGGAAGATGAAAATCAGCCCTCTGATGC
TCCGGGTCCAGGAGCAGCAGAGGTCCCGCCCCTCGTTTATAACTGCAGCTGTTGTTCCAAGTCCTTTGAC
AGCAGCACGCTGCTCAGTGCCCACATGCAGCTCCACAAGCCGACCCAGGAGCCTTTTGTGTGCAAGTACT
GCAACAAGCAGTTCACCACCCTCAACAGACTGGACCGGCACGAGCAGATCTGCATGAGGTCTAGCCACGT
GCCCATCCCAGGAGGAAACCCACCGTTCTTGGAAAACTACCCCACTATTGGTCAAGATGGAACTTCATTC
AGAAGCCCGGAATCATTAGGGCCAGAAAATAGGATTGGCGAACTATCCAGCGCGGGGAGTGCCTTGTCAG
ACGCGGACCACATGGTGAAATTTGTGAACGGGCAGATGCTCTACAGCTGCATCGTGTGCAAACGTAGTTA
TGTGACTTTGTCCAGCCTCCGGCGGCATGCAAATGTTCACTCGTGGAGAAGAACATACCCTTGCCATTAC
TGCAACAAGGTCTTTGCGCTGGCTGAGTACAGGACGCGACATGAAATCTGGCACACTGGGGAGAGGCGGT
ACCAGTGCATTTTCTGTCTTGAAACTTTTATGACCTACTACATACTAAAAAACCATCAGAAGTCCTTTCA
TGCCATAGATCACAGACTCTCCATCAATAAAAAAACAGCGAACGGAGGCTTGAAGCCTACTGTCTATCCA
TACAAACTTTACAGGCTCTTGCCTATGAGATGCAAGAGGGCACCTTATAAGAGCTACCGGAATTCTTCCT
ATGTAAGTGCTCAAGGAAGCAGTCAAAGGGGTGAATCTGCCCCTGATACGTTCATCGTTCCGAATCTGCA
AAGCTCTGAAATGCCCACACTGGACTTCCAAGATGGCAGAAACACGTTGCCCAGCAGCCCTGCCGTGCCA
GTGGAAACACCTTCACGGCAGGGCGCACCCACTTCTGCCAGAGTAAAAAATGCAGAAGGCATCAAATGGA
GGAAGCAGGCAGTGAAAACCAATCTCGTCGATAACTTCGATTCAACTGAGGTGTCAGTTTCTTCCACTGG
AAACACCGTCAGCGCCACCCTACAGACAGAGCCCGCATGTGTTTCATCTGTGGGCAAAGGCAGTGAGCAC
TCGGCCTCTGTGATCAGCTACAGCGGCTCGGTGCCCTCCGTCATTGTGCACAGCAGCCAGTTCTCGTCGG
TGATCAAGCACAGCAACACCATCGCTAGCCTGACCAACAGCAACCACAAGTCCCCTTCACAACCGGTGGT
CAGCCCGTCCCTGATCAAGGACAGCAAGCCCGAGACAGATAAAGCCAGTAAACCTGCAAGCAGACCCAAA
AGCATTAAGGAGAAAAAGAAAACTGCTCCGAGTAACAGGGGAGAAATAACAGAGGAGGCAAAATATATTG
CTGATCACGGAGGGTCTTCAGGCAAAACCACAAACGCTGAAGAAACCAGTAAGATTGAAACTTATATCGC
AAAACCTGCTCTGCCCGGTACCTCCACAAATAGCAATGTTGCACCCCTTTGCCAGATAACAGTAAAAATT
GGGAACGAAGCCATCGTGAAAAGGCATATCCTTGGGTCTAAGCTGTTTTACAAAAGAGGGAGAAAACCTA
AGTATCAAATGCAGGAAGAGACACTGCCTCGGGAGAATGACCCAGAAACCCCTGGGGACAGCCCCCTTGG
GCTTTGCCAGGCTGAATGTGTAGAGATGAGTGAAGCATTTGATGAAGTGAGTGACCAGGACTCCACTGAT
AAGCCGTGGCGCCCATACTACAACTACAAACCCAAGAAGAAATCCAAACAGCTGAGAAAAATGAGGAAAG
TCAAATGGAGGAAGGAACGCAGGAGCAGAAGCCCCGTCGGCCGGTGCAGATACCCAGCCGAACTGGATCG
TGCAGAGGTGAAACTGCCCCCAGATAAGGCCTTCGAAGAAGAAGAAGAAGAAGAAGAGAATAAAGAGATG
CCCAAGCTGCAGTGTGAGCTCTGTGATGGCTGCCCTGATGGGGCAGCAGGGGCGGGAGCCGAAGGCAAGC
CCCACCAGCATCTCACTTCGAAGCCTTACATCTGCGAGCTCTGTGCAAAGCAGTTCCAGAGCTCCTCCAC
ACTCAAGATGCACATGAGATGCCACACTGGAGAAAAGCCGTATCAGTGCAAGACCTGTGGGCGGTGCTTC
TCGGTGCAGGGGAACCTACAGAAGCACGAGCGCATACACCTGGGCGTGAAGGAGTTCATCTGTCAGTATT
GTAACAAGGCATTCACACTCAACGAGACGCTCAAGATCCACGAGAGAATCCACACTGGGGAGAAGCGCTA
CCACTGTCAGTTCTGCTTTCAGGGTTTCTTGTATCTCTCCACCAAACGGAACCACGAGCGGAGGCACATC
CGGGAGCATGATGGGAAAGGCTTTGCTTGCTTCCAGTGCCCCAAAATATGCAAAACAGCTGCTGCCCTCA
GAATGCACCAAAAGAAACACTTATACAAGACCTTACCTAAGCAAGAGGAAACAGGCGACACGTGCCACGA
GAACGCGGATCTCTTGGAAAGTCAGCTTTGCACTGATTCCGAAGACAGCGAACAAAAGGATGACATAAAA
GCCTTTGCTGAAAACGTCCTTTGA

Translation (1197 aa):
MTVMSLSRDLKDDFHSDTVLSILNEQRIRGILCDVTIIVEDTKFKAHSNVLAASSLYFKNIFWSHTICIS
SHVLELDDLKAEVFTEILNYIYSSTVVVKRQETVTDLAAAGKKLGISFLEDLSDRNFSNSPGPYVVCITE
KGVVKEEKNEKRHEEPAVTNGPRITNAFSIIETENSNNMFSPLDLRASFKKVSDSMRTASLCQERASVCH
EVEPVRTLAEHSYAVSSITEAYRSQPPREQDSSSSAKTGKETGDALATKAKPCRKPKPQTQDSDSTTENM
PLSLVTCPEVNQERSPQPAPDLSHSEPPSNEGDIHFPREDENQPSDAPGPGAAEVPPLVYNCSCCSKSFD
SSTLLSAHMQLHKPTQEPFVCKYCNKQFTTLNRLDRHEQICMRSSHVPIPGGNPPFLENYPTIGQDGTSF
RSPESLGPENRIGELSSAGSALSDADHMVKFVNGQMLYSCIVCKRSYVTLSSLRRHANVHSWRRTYPCHY
CNKVFALAEYRTRHEIWHTGERRYQCIFCLETFMTYYILKNHQKSFHAIDHRLSINKKTANGGLKPTVYP
YKLYRLLPMRCKRAPYKSYRNSSYVSAQGSSQRGESAPDTFIVPNLQSSEMPTLDFQDGRNTLPSSPAVP
VETPSRQGAPTSARVKNAEGIKWRKQAVKTNLVDNFDSTEVSVSSTGNTVSATLQTEPACVSSVGKGSEH
SASVISYSGSVPSVIVHSSQFSSVIKHSNTIASLTNSNHKSPSQPVVSPSLIKDSKPETDKASKPASRPK
SIKEKKKTAPSNRGEITEEAKYIADHGGSSGKTTNAEETSKIETYIAKPALPGTSTNSNVAPLCQITVKI
GNEAIVKRHILGSKLFYKRGRKPKYQMQEETLPRENDPETPGDSPLGLCQAECVEMSEAFDEVSDQDSTD
KPWRPYYNYKPKKKSKQLRKMRKVKWRKERRSRSPVGRCRYPAELDRAEVKLPPDKAFEEEEEEEENKEM
PKLQCELCDGCPDGAAGAGAEGKPHQHLTSKPYICELCAKQFQSSSTLKMHMRCHTGEKPYQCKTCGRCF
SVQGNLQKHERIHLGVKEFICQYCNKAFTLNETLKIHERIHTGEKRYHCQFCFQGFLYLSTKRNHERRHI
REHDGKGFACFQCPKICKTAAALRMHQKKHLYKTLPKQEETGDTCHENADLLESQLCTDSEDSEQKDDIK
AFAENVL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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