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Report for CCDS89327.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89327.1 Public Mus musculus 19 Nrxn2 23 108 98 CCDS HistoryNCBI Gene:18190Re-query CCDS DB by CCDS ID:89327.1Re-query CCDS DB by GeneID:18190See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 89327.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000137166.7 ENSMUSP00000119762.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000137166.7Link to Ensembl Protein Viewer:ENSMUSP00000119762.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000137166Re-query CCDS DB by Protein ID:ENSMUSP00000119762
Original member Current member NCBI NM_001369363.1 NP_001356292.1 Accepted alive Link to Nucleotide Sequence:NM_001369363.1Link to Protein Sequence:NP_001356292.1Re-query CCDS DB by Nucleotide ID:NM_001369363Re-query CCDS DB by Protein ID:NP_001356292Link to BLAST:NP_001356292.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001356292.1 1710 E9Q7X7-1 1710 100% 0 0

Chromosomal Locations for CCDS 89327.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 6428049 6428778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6443631 6443648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6448255 6448284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6450528 6450599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6454979 6455280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6463824 6463868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6472258 6472419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6473318 6473756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6481110 6481496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6481672 6481875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6488784 6488810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6490067 6490186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6490534 6490915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6491484 6491674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6492836 6493009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6493336 6493455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6504875 6505056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6509778 6509949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6513716 6513805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6516923 6517248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6519249 6519327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6531268 6532148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5133 nt):
ATGGCGCTCGGGAGTCGGTGGCAACCGCCACCCCAGCTGCCGCCGCTGCTGTTGCTGCTGGCGCTGGCGG
CAGGCGTCCGTGGCTTGGAGTTCGGCGGCGGCCCCGGGCAGTGGGCTCGCTACGCGCGTTGGGCGGGAGC
GGCGAGCACCGGCGAGCTCAGCTTCAGCCTGCGCACCAACGCCACGCGCGCGCTGCTGCTCTACCTGGAC
GACGGCGGCGACTGCGACTTCTTGGAGCTGCTGCTGGTGGACGGGCGCCTGCGGCTGCGCTTCACGCTGT
CTTGCGCGGAGCCCGCCACGCTGCAGCTGGACACGCCGGTGGCCGACGACCGCTGGCACATGGTGTTGCT
GACCCGCGACGCGCGGCGCACGGCGCTGGCGGTGGACGGCGAAGCCCGCGCCGCCGAGGTCCGCTCAAAG
CGGCGCGAGATGCAGGTGGCCAGCGACCTGTTCGTGGGCGGCATCCCTCCCGACGTGCGCCTATCTGCAC
TCACGCTCAGCACCGTCAAGTACGAGCCGCCTTTCCGCGGCCTTCTGGCCAACCTGAAGCTGGGCGAGCG
GCCGCCGGCGCTGCTGGGTAGCCAGGGTCTGCGCGGTGCGGCCGCCGACCCTCTGTGTGCGCCTGCGCGC
AATCCCTGCGCCAACGGCGGTCTCTGCACCGTGCTAGCCCCCGGCGAGGTGGGCTGCGACTGCAGCCACA
CTGGATTTGGCGGCAAGTTCTGCAGTGAAGAGGAACACCCCATGGAAGGTCCGGCTCACCTGACGTTAAA
CAGCGAAGTAGGGTCCTTACTGTTCTCCGAGGGGGGGGCCGGGAGAGGAGGAGCCGGCGATGTGCACCAG
CCGACAAAAGGCAAGGAGGAATTTGTGGCAACCTTCAAGGGCAATGAGTTCTTCTGCTACGACCTGTCCC
ACAACCCGATCCAGAGCAGCACTGACGAGATCACACTGGCCTTCCGCACCCTGCAGCGCAACGGGCTGAT
GCTGCACACGGGGAAGTCGGCTGACTACGTCAACCTGTCCCTCAAGTCTGGGGCTGTCTGGCTGGTCATC
AACCTAGGCTCAGGTGCCTTCGAGGCCCTCGTGGAACCCGTCAATGGCAAGTTCAACGACAACGCCTGGC
ACGACGTCCGGGTTACCCGAAACCTGCGCCAGCACGCAGGGATTGGACACGCTATGGTAAACAAACTGCA
TTATCTGGTGACCATCTCGGTGGACGGGATCCTGACCACCACAGGCTACACGCAGGAGGATTACACCATG
CTGGGCTCTGATGACTTCTTCTACATTGGGGGCAGCCCCAACACAGCCGACCTGCCTGGCTCACCTGTCA
GCAACAACTTCATGGGCTGCCTCAAGGACGTGGTCTACAAGAATAATGACTTCAAGCTGGAGCTGTCCCG
ACTGGCTAAGGAAGGGGACCCGAAGATGAAGCTGCAGGGGGATTTGTCTTTCCGTTGTGAGGATGTGGCT
GCCTTGGACCCTGTGACCTTTGAGAGTCCTGAGGCCTTTGTCGCACTGCCCCGCTGGAGCGCCAAGCGCA
CTGGTTCCATCTCCCTGGACTTCAGAACCACTGAGCCCAATGGGTTGTTGCTCTTCAGCCAGGGCCGGCG
GGCTGGGGCCGGGGTAGGCAGTCACAGTTCTACCCAGAGGGCCGACTACTTTGCCATGGAGCTGTTGGAT
GGCTACCTCTACCTTCTGCTGGACATGGGCTCCGGGGGCATCAAGCTGCGGGCGTCTAGCCGCAAGGTCA
ATGATGGTGAATGGTGCCACGTGGACTTCCAGAGGGACGGGCGCAAAGGCTCCATCTCTGTGAACAGCCG
CAGCACGCCATTCTTGGCCACAGGAGAGAGCGAGGTCCTGGACCTGGAGAGTGAGCTGTACCTGGGCGGT
CTCCCCGAGGGGGGACGAGTGGACCTGCCACTGCCCCCTGAGGTGTGGACAGCTGCTCTCCGGGCTGGCT
ACGTGGGCTGTGTGAGAGACCTCTTCATCGATGGACGGAGTCGAGATCTCCGGGGCCTGGCTGAGGCCCA
GGGGGCTGTGGGCGTTGCTCCTTTCTGCTCCCGGGAGACCCTGAAGCAGTGTGCGTCGGCCCCTTGTCGA
AACGGGGGCATCTGTCGAGAGGGCTGGAACCGGTTCGTCTGTGACTGCATCGGGACCGGCTTTCTGGGTC
GGGTCTGCGAGAGAGAGGCCACGGTCTTAAGCTATGACGGCTCCATGTACATGAAGATCATGCTGCCCAC
TGCGATGCACACGGAAGCAGAGGATGTGTCCTTACGCTTCATGTCTCAGAGGGCATATGGACTCATGATG
GCCACCACCTCCAGGGAGTCGGCTGACACTCTGCGTCTCGAGCTGGACGGGGGGCAGATGAGGCTCACCG
TCAACCTCGACTGCCTGCGCGTCGGCTGCGCACCCAGTAAAGGCCCCGAGACACTGTTTGCGGGGCACAA
GCTGAATGACAATGAATGGCACACGGTGAGGGTGGTCCGGCGTGGCAAGAGCCTGCAGCTGTCCGTGGAC
AACGTGACTGTGGAGGGACAGATGGCAGGAGCCCACACTCGGCTGGAGTTCCACAACATTGAGACGGGCA
TTATGACAGAGCGGCGGTTTATCTCTGTGGTGCCCTCCAACTTCATCGGGCACCTGAGTGGGCTGGTGTT
CAATGGTCAACCCTACATGGACCAATGCAAAGATGGAGACATCACCTATTGTGAGCTTAATGCCCGCTTT
GGCCTGCGTGCCATCGTGGCTGATCCTGTCACGTTCAAGAGTCGCAGCAGCTACCTGGCGTTAGCCACGC
TGCAAGCCTATGCTTCCATGCATCTCTTCTTCCAGTTCAAGACCACGGCCCCAGATGGACTTCTGCTGTT
CAACTCAGGCAACGGCAACGACTTCATCGTCATCGAGTTGGTCAAGGGGTACATCCACTACGTGTTTGAC
CTGGGAAATGGCCCGTCCTTGATGAAGGGAAACTCAGACAAACCAGTCAATGACAACCAATGGCACAATG
TGGTGGTGTCCAGGGACCCAGGCAACGTGCACACACTGAAGATCGACTCCCGCACAGTCACGCAGCATTC
CAACGGTGCCCGAAATCTGGATCTCAAAGGGGAGTTGTATATCGGTGGCCTGAGCAAGAATATGTTCAGC
AACCTGCCCAAGCTGGTGGCCTCTCGGGATGGCTTTCAAGGCTGCTTGGCTTCTGTGGACCTCAACGGAC
GCCTCCCAGACCTCATCGCTGACGCCCTGCACCGCATCGGGCAGGTGGAGAGGGGCTGTGATGGCCCTAG
CACCACCTGCACCGAAGAGTCTTGTGCCAACCAGGGCGTCTGTCTGCAGCAGTGGGATGGTTTTACCTGT
GACTGTACTATGACTTCCTATGGAGGCCCTGTCTGCAATGACCCTGGGACCACATACATCTTCGGGAAGG
GGGGAGCGCTCATCACCTATACATGGCCTCCCAATGACCGGCCCAGTACACGGATGGACCGCCTGGCCGT
AGGCTTCAGCACACACCAGCGGAGCGCTGTGCTGGTGCGAGTGGACAGTGCCTCCGGCCTCGGGGACTAC
TTGCAGCTGCACATTGACCAGGGCACTGTTGGGGTGATTTTTAATGTGGGCACGGACGACATTACAATTG
ATGAGCCCAACGCCATCGTGAGCGACGGCAAATATCACGTGGTGCGCTTTACTCGAAGTGGTGGCAATGC
CACCTTGCAAGTGGACAGCTGGCCAGTCAACGAGAGGTACCCGGCAGGAAACTTTGATAACGAGCGCCTG
GCGATTGCTAGACAGAGAATCCCCTACCGGCTTGGTCGAGTAGTAGATGAGTGGCTGCTCGACAAAGGAC
GCCAGCTGACCATCTTCAACAGCCAGGCTGCCATCAAGATAGGGGGCCGGGATCAGGGCCGCCCCTTCCA
GGGCCAGGTGTCCGGCCTCTACTACAATGGGCTCAAGGTACTGGCGCTGGCCGCCGAGAGCGACCCCAAT
GTGCGGACCGAAGGCCACCTACGGCTAGTAGGGGAGGGGCCGTCCGTGCTGCTCAGTGCTGAGACCACTG
CCACCACTCTGCTGGCCGACATGGCCACCACCATCATGGAGACCACCACCACCATGGCCACCACCACTAC
TCGCCGGGGCCGTTCCCCCACAATGAGGGACAGCACCACCCAGAACACAGATGACCTCCTGGTGGCCTCG
GCTGAGTGTCCAAGTGATGATGAGGACCTAGAGGAGTGTGAGCCTAGTACTGGAGGAGAGTTAATATTGC
CCATTATCACGGAGGACTCCTTAGACCCTCCTCCCGTGGCCACCCGATCCCCCTTCGTGCCCCCACCCCC
CACCTTCTACCCCTTTCTCACGGGCGTGGGTGCCACCCAAGACACCCTGCCTCCGCCCGCCGCGCGCCGC
CCGTCCTCGGGGGGCCCGTGTCAGGCCGAGCGCGACGACAGCGACTGCGAGGAGCCCGTGGAAGCCTCGG
GCTTCGCCTCCGGGGAGGTCTTTGACTCCAGCCTCCCCCCCACGGACGACGAGGACTTTTACACTACTTT
CCCCTTGGTCACGGACCGCACCACCCTCCTGTCGCCCCGCAAGCCCCGACCCAACCTCAGGACAGATGGG
GCCACGGGCGCCCCCGGGGTGCTATTTGCGCCCTCCGCCCCAGCCCCCAACCTGCCCGCGGGCAAAATGA
ACCACCGAGACCCACTGCAGCCGCTGCTGGAGAACCCACCCCTGGGGCCTGGGGTCCCCACGGCCTTCGA
GCCGCGGCGGCCGCCTCCCCTGCGCCCCGGCGTGACCTCAGCCCCCGGTTTCCCCCGTCTGCCCACAGCC
AACCCCACGGGTCCGGGGGAGCGCGGCCCGCCAGGTGCAGTGGAGGTGATCCGCGAATCCAGCAGCACCA
CGGGCATGGTGGTGGGCATCGTGGCGGCGGCGGCGCTCTGCATCCTCATTCTCCTCTACGCCATGTACAA
GTACCGCAACCGCGACGAGGGCTCCTACCAGGTGGACCAGAGCCGGAATTACATCAGTAACTCGGCCCAG
AGCAATGGGGCGGTGGTGAAGGAGAAGGCCCCTGCTGCCCCCAAGACGCCAAGCAAGGCCAAGAAGAACA
AAGACAAAGAGTATTACGTCTGA

Translation (1710 aa):
MALGSRWQPPPQLPPLLLLLALAAGVRGLEFGGGPGQWARYARWAGAASTGELSFSLRTNATRALLLYLD
DGGDCDFLELLLVDGRLRLRFTLSCAEPATLQLDTPVADDRWHMVLLTRDARRTALAVDGEARAAEVRSK
RREMQVASDLFVGGIPPDVRLSALTLSTVKYEPPFRGLLANLKLGERPPALLGSQGLRGAAADPLCAPAR
NPCANGGLCTVLAPGEVGCDCSHTGFGGKFCSEEEHPMEGPAHLTLNSEVGSLLFSEGGAGRGGAGDVHQ
PTKGKEEFVATFKGNEFFCYDLSHNPIQSSTDEITLAFRTLQRNGLMLHTGKSADYVNLSLKSGAVWLVI
NLGSGAFEALVEPVNGKFNDNAWHDVRVTRNLRQHAGIGHAMVNKLHYLVTISVDGILTTTGYTQEDYTM
LGSDDFFYIGGSPNTADLPGSPVSNNFMGCLKDVVYKNNDFKLELSRLAKEGDPKMKLQGDLSFRCEDVA
ALDPVTFESPEAFVALPRWSAKRTGSISLDFRTTEPNGLLLFSQGRRAGAGVGSHSSTQRADYFAMELLD
GYLYLLLDMGSGGIKLRASSRKVNDGEWCHVDFQRDGRKGSISVNSRSTPFLATGESEVLDLESELYLGG
LPEGGRVDLPLPPEVWTAALRAGYVGCVRDLFIDGRSRDLRGLAEAQGAVGVAPFCSRETLKQCASAPCR
NGGICREGWNRFVCDCIGTGFLGRVCEREATVLSYDGSMYMKIMLPTAMHTEAEDVSLRFMSQRAYGLMM
ATTSRESADTLRLELDGGQMRLTVNLDCLRVGCAPSKGPETLFAGHKLNDNEWHTVRVVRRGKSLQLSVD
NVTVEGQMAGAHTRLEFHNIETGIMTERRFISVVPSNFIGHLSGLVFNGQPYMDQCKDGDITYCELNARF
GLRAIVADPVTFKSRSSYLALATLQAYASMHLFFQFKTTAPDGLLLFNSGNGNDFIVIELVKGYIHYVFD
LGNGPSLMKGNSDKPVNDNQWHNVVVSRDPGNVHTLKIDSRTVTQHSNGARNLDLKGELYIGGLSKNMFS
NLPKLVASRDGFQGCLASVDLNGRLPDLIADALHRIGQVERGCDGPSTTCTEESCANQGVCLQQWDGFTC
DCTMTSYGGPVCNDPGTTYIFGKGGALITYTWPPNDRPSTRMDRLAVGFSTHQRSAVLVRVDSASGLGDY
LQLHIDQGTVGVIFNVGTDDITIDEPNAIVSDGKYHVVRFTRSGGNATLQVDSWPVNERYPAGNFDNERL
AIARQRIPYRLGRVVDEWLLDKGRQLTIFNSQAAIKIGGRDQGRPFQGQVSGLYYNGLKVLALAAESDPN
VRTEGHLRLVGEGPSVLLSAETTATTLLADMATTIMETTTTMATTTTRRGRSPTMRDSTTQNTDDLLVAS
AECPSDDEDLEECEPSTGGELILPIITEDSLDPPPVATRSPFVPPPPTFYPFLTGVGATQDTLPPPAARR
PSSGGPCQAERDDSDCEEPVEASGFASGEVFDSSLPPTDDEDFYTTFPLVTDRTTLLSPRKPRPNLRTDG
ATGAPGVLFAPSAPAPNLPAGKMNHRDPLQPLLENPPLGPGVPTAFEPRRPPPLRPGVTSAPGFPRLPTA
NPTGPGERGPPGAVEVIRESSSTTGMVVGIVAAAALCILILLYAMYKYRNRDEGSYQVDQSRNYISNSAQ
SNGAVVKEKAPAAPKTPSKAKKNKDKEYYV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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