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Report for CCDS5930.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
5930.1 |
Public |
Homo sapiens |
7 |
GALNT11 |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:63917](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:5930.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:63917](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 7 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 5930.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000430044.7 |
ENSP00000395122.2 |
MANE Select |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000430044.7](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000395122.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000430044](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000395122](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000434507.5 |
ENSP00000416787.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000434507.5](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000416787.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000434507](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000416787](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001371458.1 |
NP_001358387.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001371458.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001358387.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001371458](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001358387](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001358387.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001371459.1 |
NP_001358388.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001371459.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001358388.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001371459](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001358388](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001358388.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001371460.1 |
NP_001358389.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001371460.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001358389.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001371460](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001358389](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001358389.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001371461.1 |
NP_001358390.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001371461.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001358390.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001371461](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001358390](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001358390.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001371462.1 |
NP_001358391.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001371462.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001358391.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001371462](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001358391](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001358391.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001371463.1 |
NP_001358392.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001371463.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001358392.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001371463](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001358392](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001358392.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_022087.4 |
NP_071370.2 |
MANE Select |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_022087.4](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_071370.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_022087](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_071370](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_071370.2](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 5930.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (1827 nt): ATGGGAAGTGTCACAGTTCGGTATTTCTGTTATGGGTGCCTTTTTACATCTGCGACCTGGACAGTTTTGC TTTTTGTTTATTTCAACTTCAGTGAAGTGACTCAGCCACTTAAGAATGTGCCCGTCAAGGGGTCTGGGCC CCACGGACCATCTCCAAAAAAATTCTATCCCCGTTTCACTCGAGGCCCAAGTCGAGTGCTCGAGCCACAG TTCAAAGCAAACAAAATTGACGATGTGATAGACAGTCGTGTTGAAGATCCAGAAGAAGGCCACTTGAAAT TCTCTTCTGAATTAGGTATGATTTTTAATGAACGCGATCAAGAGTTGAGAGACTTGGGCTATCAGAAACA TGCTTTTAATATGCTTATCAGTGACCGCTTGGGCTACCACAGAGATGTGCCAGACACAAGGAATGCAGCA TGTAAAGAAAAGTTCTACCCACCTGACCTGCCAGCTGCTAGTGTTGTTATCTGTTTCTATAATGAAGCGT TTTCTGCCTTGCTTCGGACAGTGCACAGTGTCATAGACCGCACGCCAGCACACCTGCTTCATGAGATCAT CCTTGTGGATGATGATAGTGACTTTGATGATTTGAAAGGAGAACTAGATGAATATGTCCAAAAATACCTC CCTGGAAAAATTAAAGTCATAAGAAATACAAAGCGTGAGGGGTTGATTCGAGGGAGAATGATTGGCGCGG CCCACGCGACAGGAGAAGTCCTTGTGTTCCTGGACAGCCACTGTGAAGTGAATGTGATGTGGCTGCAGCC CTTGCTGGCCGCCATCCGTGAGGACCGGCACACCGTGGTGTGCCCAGTGATTGACATCATCAGCGCCGAC ACGCTGGCCTACAGCTCGTCCCCTGTCGTCCGCGGAGGGTTCAACTGGGGACTGCACTTCAAATGGGATC TTGTCCCCCTTTCTGAGCTAGGACGAGCGGAGGGAGCCACTGCACCAATAAAGTCACCAACAATGGCTGG AGGTTTGTTTGCCATGAACAGACAGTATTTCCATGAACTTGGACAGTATGATAGTGGCATGGATATCTGG GGAGGAGAAAATTTGGAAATATCATTTCGGATCTGGATGTGTGGCGGTAAGCTCTTCATCATCCCTTGCT CTAGAGTAGGACACATTTTCCGAAAAAGGCGACCATATGGATCTCCCGAAGGCCAGGACACCATGACACA CAACTCTTTGCGGCTGGCACATGTCTGGTTGGATGAATACAAGGAGCAGTATTTTTCCTTAAGACCTGAC CTGAAGACGAAAAGCTATGGCAATATCAGTGAGCGTGTGGAACTGAGAAAGAAGTTGGGCTGTAAATCAT TTAAATGGTATTTGGATAATGTATACCCAGAGATGCAGATATCTGGGTCCCACGCCAAACCCCAACAACC CATTTTTGTCAATAGAGGGCCAAAACGACCCAAAGTCCTTCAACGTGGAAGGCTCTATCACCTCCAGACC AACAAATGCCTGGTGGCCCAGGGCCGCCCAAGTCAGAAGGGAGGTCTCGTGGTGCTTAAGGCCTGTGACT ACAGTGACCCAAATCAGATCTGGATCTATAATGAAGAGCATGAATTGGTTTTAAATAGTCTCCTTTGTCT AGATATGTCAGAGACTCGCTCATCAGACCCGCCACGGCTCATGAAATGCCACGGGTCAGGAGGATCCCAG CAGTGGACCTTTGGGAAAAACAATCGGCTATACCAGGTGTCGGTTGGACAGTGCCTGAGAGCAGTGGATC CCCTGGGTCAGAAGGGCTCTGTCGCCATGGCGATCTGCGATGGCTCCTCTTCACAGCAGTGGCATTTGGA AGGTTAA
Translation (608 aa): MGSVTVRYFCYGCLFTSATWTVLLFVYFNFSEVTQPLKNVPVKGSGPHGPSPKKFYPRFTRGPSRVLEPQ FKANKIDDVIDSRVEDPEEGHLKFSSELGMIFNERDQELRDLGYQKHAFNMLISDRLGYHRDVPDTRNAA CKEKFYPPDLPAASVVICFYNEAFSALLRTVHSVIDRTPAHLLHEIILVDDDSDFDDLKGELDEYVQKYL PGKIKVIRNTKREGLIRGRMIGAAHATGEVLVFLDSHCEVNVMWLQPLLAAIREDRHTVVCPVIDIISAD TLAYSSSPVVRGGFNWGLHFKWDLVPLSELGRAEGATAPIKSPTMAGGLFAMNRQYFHELGQYDSGMDIW GGENLEISFRIWMCGGKLFIIPCSRVGHIFRKRRPYGSPEGQDTMTHNSLRLAHVWLDEYKEQYFSLRPD LKTKSYGNISERVELRKKLGCKSFKWYLDNVYPEMQISGSHAKPQQPIFVNRGPKRPKVLQRGRLYHLQT NKCLVAQGRPSQKGGLVVLKACDYSDPNQIWIYNEEHELVLNSLLCLDMSETRSSDPPRLMKCHGSGGSQ QWTFGKNNRLYQVSVGQCLRAVDPLGQKGSVAMAICDGSSSQQWHLEG
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