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Report for CCDS48895.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48895.1 Public Mus musculus 11 Tbkbp1 23 108 98 CCDS HistoryNCBI Gene:73174Re-query CCDS DB by CCDS ID:48895.1Re-query CCDS DB by GeneID:73174See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48895.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107615.7 ENSMUSP00000103240.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107615.7Link to Ensembl Protein Viewer:ENSMUSP00000103240.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107615Re-query CCDS DB by Protein ID:ENSMUSP00000103240
Original member Current member EBI ENSMUST00000118375.7 ENSMUSP00000112396.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000118375.7Link to Ensembl Protein Viewer:ENSMUSP00000112396.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000118375Re-query CCDS DB by Protein ID:ENSMUSP00000112396
Current member NCBI NM_001372527.1 NP_001359456.1 Accepted alive Link to Nucleotide Sequence:NM_001372527.1Link to Protein Sequence:NP_001359456.1Re-query CCDS DB by Nucleotide ID:NM_001372527Re-query CCDS DB by Protein ID:NP_001359456Link to BLAST:NP_001359456.1
Current member NCBI NM_001372528.1 NP_001359457.1 Accepted alive Link to Nucleotide Sequence:NM_001372528.1Link to Protein Sequence:NP_001359457.1Re-query CCDS DB by Nucleotide ID:NM_001372528Re-query CCDS DB by Protein ID:NP_001359457Link to BLAST:NP_001359457.1
Original member NCBI NM_198100.2 NP_932768.2 Updated not alive Link to Nucleotide Sequence:NM_198100.2Link to Protein Sequence:NP_932768.2Re-query CCDS DB by Nucleotide ID:NM_198100Re-query CCDS DB by Protein ID:NP_932768
Current member NCBI NM_198100.3 NP_932768.2 Accepted alive Link to Nucleotide Sequence:NM_198100.3Link to Protein Sequence:NP_932768.2Re-query CCDS DB by Nucleotide ID:NM_198100Re-query CCDS DB by Protein ID:NP_932768Link to BLAST:NP_932768.2

Chromosomal Locations for CCDS 48895.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 97137547 97137675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97138622 97139334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97139472 97139590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97146300 97146361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97146455 97146630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97147373 97147553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97148629 97148733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97148945 97149067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97149362 97149586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1833 nt):
ATGGAGTCCATGTTTGAAGATGACATCAGCATCCTGACCCAAGAGGCCTTGGGGCCCAGTGAGGTGTGGC
TGGATGGTCCTGGAGACCCGTCCCTGGGAGGGGACATGTGTTCTGCCTCCCACTTTGCCCTCATCACAGC
CTACGGAGACATCAAGGAAAGGCTAGGAGGCCTGGAGAGGGAGAATGCCACCCTCCGCCGTCGCCTCAAA
GTCTATGAGATCAAGTATCCGCTGATCACTGATTTTGGAGAGGAGCATGGCTTCCCTCTGTATGAACTCA
AGGATGGCTCCCTGCTGGAGGTGGAGAAGGTCAGTCTGCAGCAACGACTCAACCAATTCCAACACGAGTT
GCAGAAGAGTAAGGAGCAGGAGGAGCAGCTCGGGGAGATGATCCAGGCTTACGAGAAACTGTGCGTGGAG
AAAAGCGACTTGGAGACAGAGCTGGGGGAGATGCGGGCCCTGGTAGAGACTCATCTACGGCAGATCTGTG
GTCTGGAGAAACAGCTGCAGCAACAGCAGGGCCTCCGGGACGCAGCTTTCTCCAGCCTGAGCCCCCCAGC
TGTCCCCGCCTCAGCCTGTCCTGACTTGGACCTGCACTATCTGGCTCTGAGAGGGGGACCTGCCTTGGGT
CATGGTTGGCCTGGCCCTACGAGTGTAAGTGTGAGCGAGCTGGAGAGGAGGCGCCTGGAAGAGGCCCTGG
AGGCTGCGCAGGGGGAGGCTCGGGGGGCTCAGCTCCGGGAGGAGCAACTCCAGGCGGAATGCGAGAGACT
TCAGGGAGAGCTGAAGCAACTGCAGGAGACCCGGGCCCAGGATCTGGCCTCCAACCAGTCGGAATGTGAC
ATGGCTTGGGTCAAGAGAGTTGGGGATGATCAGGTGAACTTGGCGCTGGCCTACACAGAACTGACAGAGG
AGCTGGGTCGGCTTCGGGAGCTGAGTTCCCTGCAGGGGAGGATCTTGAGGACTTTGCTGCAGGAACAGGC
CCGCAACGCAGGCCAAAGGCACTCACCGCTGTCGCAACGTCACTCCCCGGCCCCTGCGTGCCCCTCACCC
TCCCCGCCTGCCCGACCGCCGCCCTGTGCCCCGTGCCAGTCCCCCGCTGCACAGCGCCGTTCGCCCGTGC
CCCCGTGCCCTTCGCCCCAGCAGCGCCGCTCGCCCGCCTCGCCGTCCTGCCCGTCCCCAGTCCCACAGCG
CCGCTCGCCCGTGCCGCCGTCGTGCCAGTCGCCCAGTCCTCAGCGCCGCTCGCCTGTGCCACCCAGCTGC
CCGGCCCCGCAGCCCCGGCCGCCGCCACCACCGGGGGAGAGGACGCTGGCCGAGCGTGTCTACGCCAAGC
CGCCCAGCCACCACGCCAAGGCCGGCTTCCAGGGCCGCCGCAGCTACTCGGAGCTGGCGGAGGGGGCGGC
CTACGCTGGTGCCTCCCCCGCCTGGCTACAGGCCGAGGCTGCCACACTTCCCAAGCCCCGCGCCTATGGC
GGCGAGCTCTACGGCAGGCCGCTCAGCCCGCGCCGAGCCTTTGAGGGCATCCGCCTGCGCTTTGAGAAGC
AGCCATCTGAAGAAGAGGAGTGGGCTATGCCGGCCAGCCCGCCCAGTCCCGAAGCGGGCACCATCCGCTG
CGCTTCATTCTGTGCGGGCTTCCCCATCCCAGAGTCGCCTGCGGCCACCGCCTATGCCCACGCTGAGCAC
GCACAGTCCTGGCCATCCATCAACCTACTGATGGAGACGGTGGGCTCTGATATCCGCAGCTGCCCCCTCT
GCCAGCTGGGTTTCCCTGTTGGGTACCCAGATGATGCTCTCATCAAACACATAGACTCCCACCTTGAGAA
CAGCAAGATCTAG

Translation (610 aa):
MESMFEDDISILTQEALGPSEVWLDGPGDPSLGGDMCSASHFALITAYGDIKERLGGLERENATLRRRLK
VYEIKYPLITDFGEEHGFPLYELKDGSLLEVEKVSLQQRLNQFQHELQKSKEQEEQLGEMIQAYEKLCVE
KSDLETELGEMRALVETHLRQICGLEKQLQQQQGLRDAAFSSLSPPAVPASACPDLDLHYLALRGGPALG
HGWPGPTSVSVSELERRRLEEALEAAQGEARGAQLREEQLQAECERLQGELKQLQETRAQDLASNQSECD
MAWVKRVGDDQVNLALAYTELTEELGRLRELSSLQGRILRTLLQEQARNAGQRHSPLSQRHSPAPACPSP
SPPARPPPCAPCQSPAAQRRSPVPPCPSPQQRRSPASPSCPSPVPQRRSPVPPSCQSPSPQRRSPVPPSC
PAPQPRPPPPPGERTLAERVYAKPPSHHAKAGFQGRRSYSELAEGAAYAGASPAWLQAEAATLPKPRAYG
GELYGRPLSPRRAFEGIRLRFEKQPSEEEEWAMPASPPSPEAGTIRCASFCAGFPIPESPAATAYAHAEH
AQSWPSINLLMETVGSDIRSCPLCQLGFPVGYPDDALIKHIDSHLENSKI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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