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Report for CCDS1837.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1837.1 Public Homo sapiens 2 FBXO11 24 110 108 CCDS HistoryNCBI Gene:80204Re-query CCDS DB by CCDS ID:1837.1Re-query CCDS DB by GeneID:80204See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1837.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000402508.5 ENSP00000385398.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000402508.5Link to Ensembl Protein Viewer:ENSP00000385398.1Re-query CCDS DB by Nucleotide ID:ENST00000402508Re-query CCDS DB by Protein ID:ENSP00000385398
Original member Current member NCBI NM_001374325.1 NP_001361254.1 Accepted alive Link to Nucleotide Sequence:NM_001374325.1Link to Protein Sequence:NP_001361254.1Re-query CCDS DB by Nucleotide ID:NM_001374325Re-query CCDS DB by Protein ID:NP_001361254Link to BLAST:NP_001361254.1
Original member Current member NCBI NM_025133.4 NP_079409.3 Accepted alive Link to Nucleotide Sequence:NM_025133.4Link to Protein Sequence:NP_079409.3Re-query CCDS DB by Nucleotide ID:NM_025133Re-query CCDS DB by Protein ID:NP_079409Link to BLAST:NP_079409.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001361254.1 843 Q86XK2-6 843 100% 0 0
NP_079409.3 843 Q86XK2-6 843 100% 0 0

Chromosomal Locations for CCDS 1837.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 47808118 47808247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 47808329 47808427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 47809158 47809266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 47809600 47809707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 47810316 47810426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 47813234 47813377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 47813791 47813867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 47818779 47818864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 47818956 47819078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 47820362 47820456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 47822218 47822303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 47823143 47823360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 47832349 47832486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 47832572 47832678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 47832769 47832880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 47832964 47833070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 47834579 47834711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 47834788 47834871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 47835872 47836001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 47838859 47839003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 47839419 47839500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 47839642 47839749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2532 nt):
ATGGTTGCAGAAGAATCAGGTCCTGGTGCACAAAATAGTCCATACCAACTTCGTAGAAAAACTCTTTTGC
CGAAAAGAACAGCGTGTCCCACAAAGAACAGTATGGAGGGCGCCTCAACTTCAACTACAGAAAACTTTGG
TCATCGTGCAAAACGTGCAAGAGTGTCTGGAAAATCACAAGATCTATCAGCAGCACCTGCTGAACAGTAT
CTTCAGGAGAAACTGCCAGATGAAGTGGTTCTAAAAATCTTCTCTTACTTGCTGGAACAGGATCTTTGTA
GAGCAGCTTGTGTATGTAAACGCTTCAGTGAACTTGCTAATGATCCAATTTTGTGGAAACGATTATATAT
GGAAGTATTTGAATATACTCGCCCTATGATGCATCCTGAACCTGGAAAATTCTACCAGATTAATCCAGAA
GAGTATGAACATCCAAATCCCTGGAAAGAGAGTTTCCAGCAGTTGTATAAAGGTGCACATGTAAAGCCAG
GATTTGCTGAACATTTCTACAGTAACCCTGCAAGATATAAAGGAAGAGAAAATATGTTGTATTATGATAC
TATTGAAGATGCCCTTGGTGGGGTACAAGAGGCTCATTTTGATGGACTTATCTTTGTTCATTCTGGAATA
TATACTGATGAATGGATATATATTGAATCTCCAATCACCATGATTGGTGCAGCACCTGGGAAAGTGGCAG
ACAAAGTTATAATTGAAAACACTAGAGATTCAACCTTCGTTTTTATGGAAGGCTCTGAAGATGCTTATGT
TGGATATATGACAATAAGGTTTAACCCTGATGACAAATCTGCACAACACCACAATGCACACCACTGCTTA
GAGATTACAGTAAATTGTAGCCCTATTATTGATCACTGTATCATCCGAAGTACATGTACAGTTGGTTCTG
CAGTATGTGTTAGTGGTCAAGGAGCATGTCCCACCATCAAGCACTGTAACATCAGTGACTGTGAAAATGT
TGGACTATATATAACAGATCATGCACAGGGAATATATGAGGATAATGAAATTTCCAATAATGCGTTAGCT
GGGATTTGGGTTAAAAATCATGGAAACCCAATTATTAGACGGAATCATATTCATCATGGACGTGATGTTG
GTGTGTTCACATTTGATCATGGCATGGGTTACTTTGAAAGTTGCAATATACACAGAAATAGGATAGCAGG
CTTTGAAGTAAAAGCCTATGCTAACCCTACAGTGGTTCGATGTGAAATTCACCATGGGCAGACTGGAGGA
ATATATGTCCATGAAAAAGGAAGAGGACAATTCATAGAGAATAAAATCTATGCAAACAACTTTGCAGGTG
TATGGATTACCTCAAATAGTGACCCAACAATAAGGGGAAATTCTATATTTAATGGAAATCAAGGAGGAGT
TTACATCTTTGGTGATGGACGAGGCCTTATTGAAGGAAATGACATTTATGGCAATGCATTAGCAGGAATT
CAAATTAGGACAAACAGTTGTCCAATTGTTCGGCATAACAAAATTCATGATGGCCAGCATGGTGGGATTT
ATGTGCATGAAAAGGGACAAGGAGTAATAGAAGAGAATGAAGTTTATAGTAACACTCTAGCTGGAGTCTG
GGTGACAACTGGCAGCACTCCAGTACTGAGAAGAAACCGGATACACAGTGGCAAGCAGGTTGGTGTTTAT
TTTTATGACAATGGACATGGAGTGCTAGAAGACAATGATATCTATAATCATATGTATTCAGGGGTTCAGA
TAAGGACTGGAAGCAACCCCAAAATTAGACGCAACAAAATCTGGGGAGGACAGAATGGTGGAATTCTAGT
TTATAATTCTGGTCTAGGCTGTATAGAAGACAATGAAATATTTGACAATGCAATGGCTGGAGTCTGGATT
AAGACAGATAGTAATCCTACACTAAGAAGAAATAAAATCCATGATGGAAGAGATGGTGGCATCTGTATAT
TTAATGGGGGTCGAGGTCTCCTTGAAGAAAATGATATTTTCAGGAATGCTCAAGCAGGTGTTCTCATCAG
CACTAATAGTCATCCAATCTTAAGGAAAAACAGAATATTTGATGGATTTGCCGCAGGTATTGAAATTACA
AATCACGCAACTGCAACACTAGAAGGCAATCAGATTTTTAACAACCGGTTTGGAGGCTTATTTTTAGCAT
CTGGTGTTAATGTGACAATGAAAGATAACAAAATAATGAACAATCAAGATGCCATAGAAAAGGCTGTTAG
TAGAGGCCAATGTTTATATAAAATATCAAGTTATACCAGCTATCCCATGCATGATTTCTACAGATGTCAT
ACTTGTAACACCACAGATCGAAATGCCATATGTGTGAACTGCATTAAGAAGTGCCATCAGGGACATGATG
TAGAGTTTATTAGACATGATAGGTTTTTCTGTGACTGTGGTGCTGGAACACTGTCTAATCCTTGTACATT
AGCTGGTGAGCCTACACATGATACAGATACACTATATGACTCTGCTCCACCTATAGAATCTAATACATTG
CAGCACAACTGA

Translation (843 aa):
MVAEESGPGAQNSPYQLRRKTLLPKRTACPTKNSMEGASTSTTENFGHRAKRARVSGKSQDLSAAPAEQY
LQEKLPDEVVLKIFSYLLEQDLCRAACVCKRFSELANDPILWKRLYMEVFEYTRPMMHPEPGKFYQINPE
EYEHPNPWKESFQQLYKGAHVKPGFAEHFYSNPARYKGRENMLYYDTIEDALGGVQEAHFDGLIFVHSGI
YTDEWIYIESPITMIGAAPGKVADKVIIENTRDSTFVFMEGSEDAYVGYMTIRFNPDDKSAQHHNAHHCL
EITVNCSPIIDHCIIRSTCTVGSAVCVSGQGACPTIKHCNISDCENVGLYITDHAQGIYEDNEISNNALA
GIWVKNHGNPIIRRNHIHHGRDVGVFTFDHGMGYFESCNIHRNRIAGFEVKAYANPTVVRCEIHHGQTGG
IYVHEKGRGQFIENKIYANNFAGVWITSNSDPTIRGNSIFNGNQGGVYIFGDGRGLIEGNDIYGNALAGI
QIRTNSCPIVRHNKIHDGQHGGIYVHEKGQGVIEENEVYSNTLAGVWVTTGSTPVLRRNRIHSGKQVGVY
FYDNGHGVLEDNDIYNHMYSGVQIRTGSNPKIRRNKIWGGQNGGILVYNSGLGCIEDNEIFDNAMAGVWI
KTDSNPTLRRNKIHDGRDGGICIFNGGRGLLEENDIFRNAQAGVLISTNSHPILRKNRIFDGFAAGIEIT
NHATATLEGNQIFNNRFGGLFLASGVNVTMKDNKIMNNQDAIEKAVSRGQCLYKISSYTSYPMHDFYRCH
TCNTTDRNAICVNCIKKCHQGHDVEFIRHDRFFCDCGAGTLSNPCTLAGEPTHDTDTLYDSAPPIESNTL
QHN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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