NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS1838.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1838.1 Public Homo sapiens 2 FOXN2 24 110 108 CCDS HistoryNCBI Gene:3344Re-query CCDS DB by CCDS ID:1838.1Re-query CCDS DB by GeneID:3344See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1838.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000340553.8 ENSP00000343633.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000340553.8Link to Ensembl Protein Viewer:ENSP00000343633.3Re-query CCDS DB by Nucleotide ID:ENST00000340553Re-query CCDS DB by Protein ID:ENSP00000343633
Original member Current member NCBI NM_001375442.1 NP_001362371.1 Accepted alive Link to Nucleotide Sequence:NM_001375442.1Link to Protein Sequence:NP_001362371.1Re-query CCDS DB by Nucleotide ID:NM_001375442Re-query CCDS DB by Protein ID:NP_001362371Link to BLAST:NP_001362371.1
Original member Current member NCBI NM_001375443.1 NP_001362372.1 Accepted alive Link to Nucleotide Sequence:NM_001375443.1Link to Protein Sequence:NP_001362372.1Re-query CCDS DB by Nucleotide ID:NM_001375443Re-query CCDS DB by Protein ID:NP_001362372Link to BLAST:NP_001362372.1
Original member Current member NCBI NM_001375444.1 NP_001362373.1 Accepted alive Link to Nucleotide Sequence:NM_001375444.1Link to Protein Sequence:NP_001362373.1Re-query CCDS DB by Nucleotide ID:NM_001375444Re-query CCDS DB by Protein ID:NP_001362373Link to BLAST:NP_001362373.1
Original member Current member NCBI NM_001375445.1 NP_001362374.1 Accepted alive Link to Nucleotide Sequence:NM_001375445.1Link to Protein Sequence:NP_001362374.1Re-query CCDS DB by Nucleotide ID:NM_001375445Re-query CCDS DB by Protein ID:NP_001362374Link to BLAST:NP_001362374.1
Original member Current member NCBI NM_001375446.1 NP_001362375.1 Accepted alive Link to Nucleotide Sequence:NM_001375446.1Link to Protein Sequence:NP_001362375.1Re-query CCDS DB by Nucleotide ID:NM_001375446Re-query CCDS DB by Protein ID:NP_001362375Link to BLAST:NP_001362375.1
Original member Current member NCBI NM_001375447.1 NP_001362376.1 Accepted alive Link to Nucleotide Sequence:NM_001375447.1Link to Protein Sequence:NP_001362376.1Re-query CCDS DB by Nucleotide ID:NM_001375447Re-query CCDS DB by Protein ID:NP_001362376Link to BLAST:NP_001362376.1
Original member Current member NCBI NM_001375448.1 NP_001362377.1 Accepted alive Link to Nucleotide Sequence:NM_001375448.1Link to Protein Sequence:NP_001362377.1Re-query CCDS DB by Nucleotide ID:NM_001375448Re-query CCDS DB by Protein ID:NP_001362377Link to BLAST:NP_001362377.1
Original member Current member NCBI NM_001375449.1 NP_001362378.1 Accepted alive Link to Nucleotide Sequence:NM_001375449.1Link to Protein Sequence:NP_001362378.1Re-query CCDS DB by Nucleotide ID:NM_001375449Re-query CCDS DB by Protein ID:NP_001362378Link to BLAST:NP_001362378.1
Original member Current member NCBI NM_001375450.1 NP_001362379.1 Accepted alive Link to Nucleotide Sequence:NM_001375450.1Link to Protein Sequence:NP_001362379.1Re-query CCDS DB by Nucleotide ID:NM_001375450Re-query CCDS DB by Protein ID:NP_001362379Link to BLAST:NP_001362379.1
Original member Current member NCBI NM_001375451.1 NP_001362380.1 Accepted alive Link to Nucleotide Sequence:NM_001375451.1Link to Protein Sequence:NP_001362380.1Re-query CCDS DB by Nucleotide ID:NM_001375451Re-query CCDS DB by Protein ID:NP_001362380Link to BLAST:NP_001362380.1
Original member Current member NCBI NM_001375452.1 NP_001362381.1 Accepted alive Link to Nucleotide Sequence:NM_001375452.1Link to Protein Sequence:NP_001362381.1Re-query CCDS DB by Nucleotide ID:NM_001375452Re-query CCDS DB by Protein ID:NP_001362381Link to BLAST:NP_001362381.1
Original member Current member NCBI NM_002158.4 NP_002149.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002158.4Link to Protein Sequence:NP_002149.2Re-query CCDS DB by Nucleotide ID:NM_002158Re-query CCDS DB by Protein ID:NP_002149Link to BLAST:NP_002149.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001362371.1 431 P32314-1 431 100% 0 0
NP_001362372.1 431 P32314-1 431 100% 0 0
NP_001362373.1 431 P32314-1 431 100% 0 0
NP_001362374.1 431 P32314-1 431 100% 0 0
NP_001362375.1 431 P32314-1 431 100% 0 0
NP_001362376.1 431 P32314-1 431 100% 0 0
NP_001362377.1 431 P32314-1 431 100% 0 0
NP_001362378.1 431 P32314-1 431 100% 0 0
NP_001362379.1 431 P32314-1 431 100% 0 0
NP_001362380.1 431 P32314-1 431 100% 0 0
NP_001362381.1 431 P32314-1 431 100% 0 0
NP_002149.2 431 P32314-1 431 100% 0 0

Chromosomal Locations for CCDS 1838.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 48346215 48346751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 48359047 48359147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 48362643 48362707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 48373292 48373360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 48374920 48375443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1296 nt):
ATGGGTCCAGTAATTGGAATGACTCCAGATAAGAGAGCTGAAACCCCAGGAGCTGAAAAGATTGCAGGAT
TAAGCCAGATTTACAAAATGGGAAGCTTGCCTGAAGCTGTTGATGCTGCCAGGCCGAAGGCCACTCTAGT
GGACAGTGAGTCAGCAGATGATGAACTCACAAACTTGAACTGGCTTCATGAAAGCACTAATCTTCTAACA
AACTTCAGCCTCGGAAGTGAGGGTCTTCCAATTGTTAGTCCATTGTATGACATAGAGGGAGATGATGTGC
CATCCTTTGGACCAGCTTGCTACCAGAACCCAGAAAAAAAATCAGCGACTTCAAAGCCCCCATACTCCTT
TAGTCTTCTCATTTATATGGCCATTGAGCACTCTCCAAATAAATGTTTGCCTGTCAAAGAAATTTATAGC
TGGATTCTGGACCATTTTCCATATTTTGCTACTGCACCAACAGGCTGGAAGAATTCTGTTCGACATAATC
TGTCCCTGAATAAATGTTTTCAGAAAGTGGAAAGAAGCCATGGCAAGGTTAATGGAAAAGGTTCCTTATG
GTGTGTTGATCCGGAATATAAACCCAATCTTATCCAGGCACTGAAGAAGCAACCTTTTTCTTCAGCATCT
TCACAAAATGGTTCTTTATCACCTCACTATTTAAGCTCTGTAATCAAGCAGAACCAGGTGCGAAACCTCA
AAGAATCTGATATTGATGCTGCTGCTGCAATGATGCTTTTAAATACTTCTATAGAACAAGGAATTTTAGA
ATGTGAGAAGCCTCTTCCTCTTAAAACAGCATTGCAAAAAAAGAGGAGTTACGGCAATGCATTTCATCAT
CCCAGTGCTGTACGATTACAAGAGAGTGATTCTTTAGCCACCAGCATTGATCCAAAAGAAGATCACAATT
ACAGTGCAAGTAGCATGGCAGCACAGCGTTGTGCATCCAGGTCTAGCGTGTCTTCCCTGTCTTCTGTGGA
TGAGGTATATGAATTTATCCCAAAGAATAGTCACGTGGGAAGTGATGGCAGTGAAGGATTTCACAGTGAA
GAAGATACAGACGTTGATTATGAAGATGATCCTCTTGGAGACAGTGGCTATGCATCACAGCCTTGTGCAA
AAATCTCTGAAAAAGGGCAGTCAGGCAAAAAGATGCGAAAACAGACATGTCAAGAAATTGATGAGGAGCT
CAAAGAGGCAGCTGGATCTCTGCTCCACCTTGCTGGAATTCGTACATGTTTAGGTTCCCTAATAAGTACT
GCAAAGACACAAAATCAAAAGCAACGGAAAAAATAG

Translation (431 aa):
MGPVIGMTPDKRAETPGAEKIAGLSQIYKMGSLPEAVDAARPKATLVDSESADDELTNLNWLHESTNLLT
NFSLGSEGLPIVSPLYDIEGDDVPSFGPACYQNPEKKSATSKPPYSFSLLIYMAIEHSPNKCLPVKEIYS
WILDHFPYFATAPTGWKNSVRHNLSLNKCFQKVERSHGKVNGKGSLWCVDPEYKPNLIQALKKQPFSSAS
SQNGSLSPHYLSSVIKQNQVRNLKESDIDAAAAMMLLNTSIEQGILECEKPLPLKTALQKKRSYGNAFHH
PSAVRLQESDSLATSIDPKEDHNYSASSMAAQRCASRSSVSSLSSVDEVYEFIPKNSHVGSDGSEGFHSE
EDTDVDYEDDPLGDSGYASQPCAKISEKGQSGKKMRKQTCQEIDEELKEAAGSLLHLAGIRTCLGSLIST
AKTQNQKQRKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH