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Report for CCDS1838.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1838.1 Public Homo sapiens 2 FOXN2 24 110 108 CCDS HistoryNCBI Gene:3344Re-query CCDS DB by CCDS ID:1838.1Re-query CCDS DB by GeneID:3344See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1838.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000340553.8 ENSP00000343633.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000340553.8Link to Ensembl Protein Viewer:ENSP00000343633.3Re-query CCDS DB by Nucleotide ID:ENST00000340553Re-query CCDS DB by Protein ID:ENSP00000343633
Original member Current member NCBI NM_001375442.1 NP_001362371.1 Accepted alive Link to Nucleotide Sequence:NM_001375442.1Link to Protein Sequence:NP_001362371.1Re-query CCDS DB by Nucleotide ID:NM_001375442Re-query CCDS DB by Protein ID:NP_001362371Link to BLAST:NP_001362371.1
Original member Current member NCBI NM_001375443.1 NP_001362372.1 Accepted alive Link to Nucleotide Sequence:NM_001375443.1Link to Protein Sequence:NP_001362372.1Re-query CCDS DB by Nucleotide ID:NM_001375443Re-query CCDS DB by Protein ID:NP_001362372Link to BLAST:NP_001362372.1
Original member Current member NCBI NM_001375444.1 NP_001362373.1 Accepted alive Link to Nucleotide Sequence:NM_001375444.1Link to Protein Sequence:NP_001362373.1Re-query CCDS DB by Nucleotide ID:NM_001375444Re-query CCDS DB by Protein ID:NP_001362373Link to BLAST:NP_001362373.1
Original member Current member NCBI NM_001375445.1 NP_001362374.1 Accepted alive Link to Nucleotide Sequence:NM_001375445.1Link to Protein Sequence:NP_001362374.1Re-query CCDS DB by Nucleotide ID:NM_001375445Re-query CCDS DB by Protein ID:NP_001362374Link to BLAST:NP_001362374.1
Original member Current member NCBI NM_001375446.1 NP_001362375.1 Accepted alive Link to Nucleotide Sequence:NM_001375446.1Link to Protein Sequence:NP_001362375.1Re-query CCDS DB by Nucleotide ID:NM_001375446Re-query CCDS DB by Protein ID:NP_001362375Link to BLAST:NP_001362375.1
Original member Current member NCBI NM_001375447.1 NP_001362376.1 Accepted alive Link to Nucleotide Sequence:NM_001375447.1Link to Protein Sequence:NP_001362376.1Re-query CCDS DB by Nucleotide ID:NM_001375447Re-query CCDS DB by Protein ID:NP_001362376Link to BLAST:NP_001362376.1
Original member Current member NCBI NM_001375448.1 NP_001362377.1 Accepted alive Link to Nucleotide Sequence:NM_001375448.1Link to Protein Sequence:NP_001362377.1Re-query CCDS DB by Nucleotide ID:NM_001375448Re-query CCDS DB by Protein ID:NP_001362377Link to BLAST:NP_001362377.1
Original member Current member NCBI NM_001375449.1 NP_001362378.1 Accepted alive Link to Nucleotide Sequence:NM_001375449.1Link to Protein Sequence:NP_001362378.1Re-query CCDS DB by Nucleotide ID:NM_001375449Re-query CCDS DB by Protein ID:NP_001362378Link to BLAST:NP_001362378.1
Original member Current member NCBI NM_001375450.1 NP_001362379.1 Accepted alive Link to Nucleotide Sequence:NM_001375450.1Link to Protein Sequence:NP_001362379.1Re-query CCDS DB by Nucleotide ID:NM_001375450Re-query CCDS DB by Protein ID:NP_001362379Link to BLAST:NP_001362379.1
Original member Current member NCBI NM_001375451.1 NP_001362380.1 Accepted alive Link to Nucleotide Sequence:NM_001375451.1Link to Protein Sequence:NP_001362380.1Re-query CCDS DB by Nucleotide ID:NM_001375451Re-query CCDS DB by Protein ID:NP_001362380Link to BLAST:NP_001362380.1
Original member Current member NCBI NM_001375452.1 NP_001362381.1 Accepted alive Link to Nucleotide Sequence:NM_001375452.1Link to Protein Sequence:NP_001362381.1Re-query CCDS DB by Nucleotide ID:NM_001375452Re-query CCDS DB by Protein ID:NP_001362381Link to BLAST:NP_001362381.1
Original member Current member NCBI NM_002158.4 NP_002149.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002158.4Link to Protein Sequence:NP_002149.2Re-query CCDS DB by Nucleotide ID:NM_002158Re-query CCDS DB by Protein ID:NP_002149Link to BLAST:NP_002149.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001362371.1 431 P32314-1 431 100% 0 0
NP_001362372.1 431 P32314-1 431 100% 0 0
NP_001362373.1 431 P32314-1 431 100% 0 0
NP_001362374.1 431 P32314-1 431 100% 0 0
NP_001362375.1 431 P32314-1 431 100% 0 0
NP_001362376.1 431 P32314-1 431 100% 0 0
NP_001362377.1 431 P32314-1 431 100% 0 0
NP_001362378.1 431 P32314-1 431 100% 0 0
NP_001362379.1 431 P32314-1 431 100% 0 0
NP_001362380.1 431 P32314-1 431 100% 0 0
NP_001362381.1 431 P32314-1 431 100% 0 0
NP_002149.2 431 P32314-1 431 100% 0 0

Chromosomal Locations for CCDS 1838.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 48346215 48346751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 48359047 48359147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 48362643 48362707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 48373292 48373360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 48374920 48375443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1296 nt):
ATGGGTCCAGTAATTGGAATGACTCCAGATAAGAGAGCTGAAACCCCAGGAGCTGAAAAGATTGCAGGAT
TA
AGCCAGATTTACAAAATGGGAAGCTTGCCTGAAGCTGTTGATGCTGCCAGGCCGAAGGCCACTCTAGT
G
GACAGTGAGTCAGCAGATGATGAACTCACAAACTTGAACTGGCTTCATGAAAGCACTAATCTTCTAACA
AAC
TTCAGCCTCGGAAGTGAGGGTCTTCCAATTGTTAGTCCATTGTATGACATAGAGGGAGATGATGTGC
CA
TCCTTTGGACCAGCTTGCTACCAGAACCCAGAAAAAAAATCAGCGACTTCAAAGCCCCCATACTCCTT
T
AGTCTTCTCATTTATATGGCCATTGAGCACTCTCCAAATAAATGTTTGCCTGTCAAAGAAATTTATAGC
TGG
ATTCTGGACCATTTTCCATATTTTGCTACTGCACCAACAGGCTGGAAGAATTCTGTTCGACATAATC
TG
TCCCTGAATAAATGTTTTCAGAAAGTGGAAAGAAGCCATGGCAAGGTTAATGGAAAAGGTTCCTTATG
G
TGTGTTGATCCGGAATATAAACCCAATCTTATCCAGGCACTGAAGAAGCAACCTTTTTCTTCAGCATCT
TCA
CAAAATGGTTCTTTATCACCTCACTATTTAAGCTCTGTAATCAAGCAGAACCAGGTGCGAAACCTCA
AA
GAATCTGATATTGATGCTGCTGCTGCAATGATGCTTTTAAATACTTCTATAGAACAAGGAATTTTAGA
A
TGTGAGAAGCCTCTTCCTCTTAAAACAGCATTGCAAAAAAAGAGGAGTTACGGCAATGCATTTCATCAT
CCC
AGTGCTGTACGATTACAAGAGAGTGATTCTTTAGCCACCAGCATTGATCCAAAAGAAGATCACAATT
AC
AGTGCAAGTAGCATGGCAGCACAGCGTTGTGCATCCAGGTCTAGCGTGTCTTCCCTGTCTTCTGTGGA
T
GAGGTATATGAATTTATCCCAAAGAATAGTCACGTGGGAAGTGATGGCAGTGAAGGATTTCACAGTGAA
GAA
GATACAGACGTTGATTATGAAGATGATCCTCTTGGAGACAGTGGCTATGCATCACAGCCTTGTGCAA
AA
ATCTCTGAAAAAGGGCAGTCAGGCAAAAAGATGCGAAAACAGACATGTCAAGAAATTGATGAGGAGCT
C
AAAGAGGCAGCTGGATCTCTGCTCCACCTTGCTGGAATTCGTACATGTTTAGGTTCCCTAATAAGTACT
GCA
AAGACACAAAATCAAAAGCAACGGAAAAAATAG


Translation (431 aa):
MGPVIGMTPDKRAETPGAEKIAGLSQIYKMGSLPEAVDAARPKATLVDSESADDELTNLNWLHESTNLLT
N
FSLGSEGLPIVSPLYDIEGDDVPSFGPACYQNPEKKSATSKPPYSFSLLIYMAIEHSPNKCLPVKEIYS
W
ILDHFPYFATAPTGWKNSVRHNLSLNKCFQKVERSHGK
VNGKGSLWCVDPEYKPNLIQALKKQPFSSAS
S
Q
NGSLSPHYLSSVIKQNQVRNLKESDIDAAAAMMLLNTSIEQGILECEKPLPLKTALQKKRSYGNAFHH
P
SAVRLQESDSLATSIDPKEDHNYSASSMAAQRCASRSSVSSLSSVDEVYEFIPKNSHVGSDGSEGFHSE
E
DTDVDYEDDPLGDSGYASQPCAKISEKGQSGKKMRKQTCQEIDEELKEAAGSLLHLAGIRTCLGSLIST
A
KTQNQKQRKK




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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