NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS43330.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43330.1 Public Homo sapiens 5 FAM169A 24 110 108 CCDS HistoryNCBI Gene:26049Re-query CCDS DB by CCDS ID:43330.1Re-query CCDS DB by GeneID:26049See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 43330.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000389156.9 ENSP00000373808.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000389156.9Link to Ensembl Protein Viewer:ENSP00000373808.4Re-query CCDS DB by Nucleotide ID:ENST00000389156Re-query CCDS DB by Protein ID:ENSP00000373808
Original member Current member EBI ENST00000687041.1 ENSP00000508577.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000687041.1Link to Ensembl Protein Viewer:ENSP00000508577.1Re-query CCDS DB by Nucleotide ID:ENST00000687041Re-query CCDS DB by Protein ID:ENSP00000508577
Original member Current member NCBI NM_001376049.1 NP_001362978.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001376049.1Link to Protein Sequence:NP_001362978.1Re-query CCDS DB by Nucleotide ID:NM_001376049Re-query CCDS DB by Protein ID:NP_001362978Link to BLAST:NP_001362978.1
Original member Current member NCBI NM_001376050.1 NP_001362979.1 Accepted alive Link to Nucleotide Sequence:NM_001376050.1Link to Protein Sequence:NP_001362979.1Re-query CCDS DB by Nucleotide ID:NM_001376050Re-query CCDS DB by Protein ID:NP_001362979Link to BLAST:NP_001362979.1
Original member Current member NCBI NM_001376051.1 NP_001362980.1 Accepted alive Link to Nucleotide Sequence:NM_001376051.1Link to Protein Sequence:NP_001362980.1Re-query CCDS DB by Nucleotide ID:NM_001376051Re-query CCDS DB by Protein ID:NP_001362980Link to BLAST:NP_001362980.1
Original member Current member NCBI NM_001376052.1 NP_001362981.1 Accepted alive Link to Nucleotide Sequence:NM_001376052.1Link to Protein Sequence:NP_001362981.1Re-query CCDS DB by Nucleotide ID:NM_001376052Re-query CCDS DB by Protein ID:NP_001362981Link to BLAST:NP_001362981.1
Original member Current member NCBI NM_015566.3 NP_056381.1 Accepted alive Link to Nucleotide Sequence:NM_015566.3Link to Protein Sequence:NP_056381.1Re-query CCDS DB by Nucleotide ID:NM_015566Re-query CCDS DB by Protein ID:NP_056381Link to BLAST:NP_056381.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001362978.1 670 Q9Y6X4-1 670 100% 0 0
NP_001362979.1 670 Q9Y6X4-1 670 100% 0 0
NP_001362980.1 670 Q9Y6X4-1 670 100% 0 0
NP_001362981.1 670 Q9Y6X4-1 670 100% 0 0
NP_056381.1 670 Q9Y6X4-1 670 100% 0 0

Chromosomal Locations for CCDS 43330.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 74781460 74782008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 74782931 74783134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 74796030 74796186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 74800880 74801030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 74801590 74801629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 74804493 74804605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 74805156 74805284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 74813840 74814019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 74834426 74834597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 74838965 74839050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 74840074 74840173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 74841545 74841676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2013 nt):
ATGGCATTCCCTGTGGATATGCTGGAAAATTGCAGCCATGAGGAATTGGAAAATTCTGCTGAAGATTACA
TGTCAGATTTAAGGTGTGGGGACCCTGAAAATCCAGAGTGTTTTTCTCTTCTCAATATTACGATTCCTAT
TAGCCTGTCAAATGTAGGCTTTGTACCTCTTTATGGTGGAGATCAGACCCAGAAAATTCTTGCTCTCTTT
GCACCTGAAGATTCACTGACAGCTGTGGCACTTTACCTTGCTGATCAGTGGTGGGCTATTGATGATATTG
TGAAAACATCTGTTCCTTCAAGAGAGGGGCTTAAGCAGGTGAGCACTCTTGGGGAGAGAGTGGTTCTGTA
TGTTCTGAATCGAATTATTTATAGAAAACAGGAAATGGAGAGAAATGAGATCCCATTCCTGTGTCATAGC
AGTACTGATTATGCTAAGATTCTGTGGAAGAAAGGAGAGGCCATTGGGTTTTATTCAGTTAAGCCTACAG
GAAGCATATGTGCCTCTTTTCTTACCCAAAGTTACCAATTGCCAGTTCTTGATACAATGTTTCTAAGAAA
GAAATACAGAGGTAAAGATTTTGGGCTTCACATGCTGGAGGACTTTGTTGATTCCTTTACAGAAGATGCG
CTTGGCTTGCGGTATCCACTGTCTTCTCTCATGTATACAGCTTGCAAGCAATACTTTGAGAAGTATCCAG
GAGACCATGAACTCCTTTGGGAAGTTGAAGGTGTTGGACACTGGTACCAGCGAATACCAGTCACCAGAGC
ATTACAAAGAGAAGCACTTAAAATTCTAGCACTTTCTCAAAATGAACCTAAAAGACCTATGTCTGGAGAA
TATGGTCCTGCATCTGTTCCAGAATACGAAGCAAGAACTGAAGACAATCAGTCTAGTGAGATGCAGCTAA
CTATTGATTCTCTAAAAGATGCCTTTGCAAGCACTTCCGAAGGTCATGATAAAACATCTGTTTCCACTCA
TACTCGAAGTGGTAATCTAAAGCGGCCAAAGATTGGAAAGCGGTTTCAGGATTCTGAATTTAGCAGTTCT
CAAGGTGAAGATGAAAAGACCTCCCAGACTTCACTTACAGCTTCAATAAACAAATTGGAGTCTACTGCAC
GCCCATCAGAGAGCTCAGAAGAATTCCTGGAAGAAGAACCTGAACAGAGAGGGATTGAATTTGAGGATGA
AAGCAGTGATAGAGATGCACGGCCAGCACTGGAAACCCAGCCACAGCAAGAGAAGCAAGATGGTGAAAAG
GAATCTGAATTAGAGCCTATGAATGGTGAGATAATGGACGATTCTCTTAAGACCTCACTTATAACAGAAG
AGGAAGACTCCACTAGTGAAGTTTTAGATGAAGAATTAAAATTGCAGCCTTTTAATTCCAGTGAAGACTC
TACAAATCTTGTTCCACTGGTGGTAGAATCTTCAAAACCCCCTGAGGTAGATGCACCAGATAAGACCCCA
CGTATACCTGACTCAGAAATGTTGATGGATGAAGGCACATCTGATGAAAAGGGGCACATGGAAGAGAAAT
TGTCCCTACTTCCAAGAAAGAAAGCACATCTTGGGAGTTCAGACAATGTTGCTACTATGTCAAATGAAGA
ACGATCTGATGGTGGTTTTCCAAACTCTGTGATAGCTGAATTTTCCGAAGAACCGGTCTCTGAGAATTTG
TCTCCTAATACTACTTCCTCATTGGAAGACCAGGGTGAGGAGGGGGTATCTGAGCCCCAGGAAACATCTA
CTGCTCTTCCTCAGAGTTCTTTGATAGAGGTTGAACTTGAAGACGTGCCATTTTCACAGAATGCAGGACA
GAAGAATCAGTCAGAGGAGCAGTCTGAAGCATCTTCCGAGCAACTGGATCAGTTTACACAATCGGCAGAA
AAAGCTGTGGATAGCAGCTCAGAGGAAATAGAAGTGGAAGTGCCTGTGGTAGACAGGCGGAATTTAAGAA
GAAAGGCCAAAGGGCATAAAGGACCTGCTAAGAAGAAAGCTAAGCTGACCTGA

Translation (670 aa):
MAFPVDMLENCSHEELENSAEDYMSDLRCGDPENPECFSLLNITIPISLSNVGFVPLYGGDQTQKILALF
APEDSLTAVALYLADQWWAIDDIVKTSVPSREGLKQVSTLGERVVLYVLNRIIYRKQEMERNEIPFLCHS
STDYAKILWKKGEAIGFYSVKPTGSICASFLTQSYQLPVLDTMFLRKKYRGKDFGLHMLEDFVDSFTEDA
LGLRYPLSSLMYTACKQYFEKYPGDHELLWEVEGVGHWYQRIPVTRALQREALKILALSQNEPKRPMSGE
YGPASVPEYEARTEDNQSSEMQLTIDSLKDAFASTSEGHDKTSVSTHTRSGNLKRPKIGKRFQDSEFSSS
QGEDEKTSQTSLTASINKLESTARPSESSEEFLEEEPEQRGIEFEDESSDRDARPALETQPQQEKQDGEK
ESELEPMNGEIMDDSLKTSLITEEEDSTSEVLDEELKLQPFNSSEDSTNLVPLVVESSKPPEVDAPDKTP
RIPDSEMLMDEGTSDEKGHMEEKLSLLPRKKAHLGSSDNVATMSNEERSDGGFPNSVIAEFSEEPVSENL
SPNTTSSLEDQGEEGVSEPQETSTALPQSSLIEVELEDVPFSQNAGQKNQSEEQSEASSEQLDQFTQSAE
KAVDSSSEEIEVEVPVVDRRNLRRKAKGHKGPAKKKAKLT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH