NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS2734.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2734.1 Public Homo sapiens 3 FYCO1 24 110 108 CCDS HistoryNCBI Gene:79443Re-query CCDS DB by CCDS ID:2734.1Re-query CCDS DB by GeneID:79443See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2734.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000296137.7 ENSP00000296137.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000296137.7Link to Ensembl Protein Viewer:ENSP00000296137.2Re-query CCDS DB by Nucleotide ID:ENST00000296137Re-query CCDS DB by Protein ID:ENSP00000296137
Original member Current member NCBI NM_001386421.1 NP_001373350.1 Accepted alive Link to Nucleotide Sequence:NM_001386421.1Link to Protein Sequence:NP_001373350.1Re-query CCDS DB by Nucleotide ID:NM_001386421Re-query CCDS DB by Protein ID:NP_001373350Link to BLAST:NP_001373350.1
Original member Current member NCBI NM_001386422.1 NP_001373351.1 Accepted alive Link to Nucleotide Sequence:NM_001386422.1Link to Protein Sequence:NP_001373351.1Re-query CCDS DB by Nucleotide ID:NM_001386422Re-query CCDS DB by Protein ID:NP_001373351Link to BLAST:NP_001373351.1
Original member Current member NCBI NM_024513.4 NP_078789.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024513.4Link to Protein Sequence:NP_078789.2Re-query CCDS DB by Nucleotide ID:NM_024513Re-query CCDS DB by Protein ID:NP_078789Link to BLAST:NP_078789.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001373350.1 1478 Q9BQS8-1 1478 100% 0 0
NP_001373351.1 1478 Q9BQS8-1 1478 100% 0 0
NP_078789.2 1478 Q9BQS8-1 1478 100% 0 0

Chromosomal Locations for CCDS 2734.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 45921765 45921840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45923656 45923765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45931071 45931281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45936448 45936543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45955249 45955393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45958408 45958619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45959393 45959542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45962225 45962392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45964336 45964454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45965033 45965125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45966277 45968703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45969675 45969765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45973088 45973231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45975239 45975345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45979705 45979830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45981570 45981676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45984856 45984910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4437 nt):
ATGGCCTCCACCAATGCAGAGAGCCAGCTCCAGAGAATCATCCGAGACTTGCAAGATGCTGTGACAGAAC
TAAGCAAAGAATTTCAGGAAGCAGGGGAACCCATCACGGATGACAGCACCAGCTTGCATAAATTTTCTTA
TAAACTTGAGTATCTCCTGCAATTTGATCAGAAAGAGAAGGCCACCCTCCTGGGCAACAAGAAGGACTAC
TGGGATTACTTCTGTGCCTGCCTGGCCAAGGTGAAAGGAGCCAATGATGGGATCCGCTTTGTCAAGTCTA
TCTCAGAGCTCCGAACATCCTTGGGGAAAGGAAGAGCATTTATTCGCTACTCCTTGGTGCACCAGAGGTT
GGCAGACACCTTACAGCAGTGCTTCATGAACACCAAAGTGACCAGTGACTGGTACTATGCAAGAAGCCCC
TTTCTGCAGCCAAAGCTGAGCTCGGACATTGTGGGCCAACTCTATGAGCTGACTGAGGTTCAGTTTGACC
TGGCGTCGAGGGGCTTTGACTTGGATGCTGCCTGGCCAACATTTGCCAGGAGGACGCTGACCACTGGCTC
TTCTGCTTACCTGTGGAAACCCCCTAGCCGCAGCTCCAGCATGAGCAGCTTGGTGAGCAGCTACCTGCAG
ACTCAAGAGATGGTGTCCAACTTTGACCTGAACAGCCCCCTAAACAACGAGGCATTGGAGGGCTTTGATG
AGATGCGACTAGAGCTGGACCAGTTGGAGGTGCGGGAGAAGCAGCTACGGGAGCGCATGCAGCAGCTGGA
CAGAGAGAACCAGGAGCTGAGGGCAGCTGTCAGCCAGCAAGGGGAGCAACTGCAGACAGAGAGGGAGAGG
GGGCGCACTGCAGCGGAGGACAACGTTCGCCTCACTTGCTTGGTAGCTGAGCTCCAGAAGCAGTGGGAGG
TCACCCAGGCCACCCAGAACACTGTGAAGGAGCTGCAGACATGCCTGCAGGGCCTGGAGCTAGGAGCAGC
AGAGAAGGAGGAGGACTACCACACAGCCCTGCGGCGGCTGGAGTCCATGCTGCAGCCCTTGGCACAGGAG
CTTGAGGCCACACGGGACTCACTGGACAAGAAAAACCAGCATTTAGCCAGCTTCCCAGGCTGGCTAGCCA
TGGCTCAGCAGAAGGCAGATACGGCATCAGACACAAAGGGCCGGCAAGAACCTATTCCCAGTGATGCGGC
CCAGGAGATGCAGGAGCTAGGGGAGAAGCTTCAAGCCCTAGAAAGGGAGAGAACCAAGGTCGAGGAGGTC
AACAGACAGCAGAGTGCCCAACTGGAACAGCTGGTCAAGGAGCTTCAGCTGAAAGAGGATGCCCGGGCCA
GCCTGGAGCGCCTGGTGAAGGAGATGGCCCCACTCCAGGAGGAGTTGTCTGGGAAGGGACAGGAGGCAGA
CCAGCTCTGGCGACGGCTGCAGGAGTTGCTGGCCCACACGAGCTCCTGGGAGGAGGAGCTAGCAGAGTTG
AGGCGGGAGAAAAAACAGCAACAGGAGGAGAAGGAGCTGCTGGAGCAGGAGGTCAGGTCTCTGACCCGGC
AGCTGCAGTTCCTGGAGACCCAGCTGGCACAGGTGAGCCAACATGTGAGTGACCTGGAGGAGCAGAAGAA
GCAGCTCATTCAGGACAAAGACCACCTCAGCCAGCAGGTGGGTATGCTCGAGCGGCTTGCTGGGCCGCCT
GGCCCAGAACTGCCAGTGGCAGGTGAGAAGAATGAGGCCCTGGTCCCTGTGAACTCCAGTCTGCAAGAGG
CCTGGGGGAAGCCAGAGGAGGAGCAGAGGGGCCTGCAGGAGGCACAGTTAGACGATACCAAGGTGCAAGA
GGGCAGCCAGGAGGAAGAGCTCCGGCAGGCCAACAGGGAGCTGGAGAAGGAGCTACAGAATGTGGTCGGG
CGTAACCAGCTCCTGGAGGGCAAGCTGCAAGCCCTGCAGGCCGATTACCAGGCTTTGCAGCAGCGGGAAT
CAGCCATCCAGGGCTCCTTGGCCTCCCTGGAGGCCGAGCAGGCCAGCATCCGGCACTTGGGTGACCAGAT
GGAGGCGAGCTTGCTGGCTGTAAGGAAGGCCAAGGAGGCCATGAAAGCCCAGATGGCAGAGAAGGAGGCC
ATTCTACAGAGCAAGGAGGGCGAGTGTCAGCAGCTGCGGGAGGAGGTGGAGCAGTGCCAGCAACTGGCAG
AAGCCCGGCACAGAGAGCTTAGGGCTCTCGAGAGCCAGTGCCAGCAGCAGACCCAGCTGATTGAGGTCCT
CACAGCAGAGAAAGGCCAACAGGGAGTTGGCCCACCCACTGACAATGAAGCCCGTGAGCTGGCTGCCCAG
CTAGCCCTGTCTCAGGCGCAGCTGGAAGTCCATCAGGGGGAGGTCCAACGGCTGCAGGCTCAGGTGGTGG
ACCTCCAGGCCAAGATGCGGGCAGCCCTGGATGACCAGGACAAGGTGCAGAGCCAGCTAAGCATGGCTGA
GGCCGTCCTGAGGGAGCACAAAACCCTTGTGCAGCAGCTGAAGGAGCAGAATGAAGCCCTTAACAGAGCC
CATGTCCAGGAGCTGCTGCAATGCTCGGAGCGTGAAGGGGCACTGCAGGAGGAGAGGGCCGATGAGGCCC
AGCAGAGGGAGGAGGAGCTGCGGGCCCTGCAGGAGGAGCTGTCCCAGGCCAAATGCAGCTCCGAGGAAGC
ACAGCTGGAGCACGCTGAGCTGCAAGAGCAGCTGCACCGGGCCAACACAGACACAGCTGAGCTGGGCATC
CAGGTTTGCGCACTGACCGTGGAAAAGGAGCGAGTGGAGGAGGCACTGGCCTGTGCTGTCCAGGAGCTCC
AGGACGCCAAAGAGGCAGCCTCAAGGGAGCGAGAGGGCCTGGAGCGCCAAGTAGCTGGGCTGCAGCAAGA
GAAGGAGAGCTTGCAGGAGAAGCTGAAGGCGGCCAAGGCAGCAGCCGGCTCACTGCCTGGCCTGCAGGCC
CAGCTCGCCCAGGCAGAGCAGCGGGCCCAGAGCCTCCAAGAGGCTGCACACCAGGAGCTCAACACCCTCA
AGTTCCAGCTGAGTGCTGAAATCATGGACTACCAGAGCAGACTTAAGAATGCTGGTGAAGAGTGCAAGAG
CCTCAGGGGCCAGCTTGAGGAGCAAGGCCGGCAGCTGCAGGCTGCTGAGGAAGCTGTGGAGAAGCTGAAG
GCCACCCAAGCAGACATGGGAGAGAAGCTGAGCTGCACTAGCAACCATCTTGCAGAGTGCCAGGCGGCCA
TGCTGAGGAAGGACAAGGAGGGGGCTGCCCTGCGTGAAGACCTAGAAAGGACCCAGAAGGAACTCGAAAA
AGCCACAACAAAAATCCAAGAGTATTACAACAAACTCTGCCAGGAGGTGACAAATCGTGAGAGGAATGAC
CAGAAGATGCTTGCTGACCTGGATGACCTCAACAGAACCAAGAAGTATCTCGAGGAGCGGCTGATAGAGC
TGCTCAGGGACAAGGATGCTCTCTGGCAGAAGTCAGATGCCCTGGAATTCCAGCAGAAGCTCAGTGCTGA
GGAGAGATGGCTCGGAGACACAGAGGCAAACCACTGCCTCGACTGTAAGCGGGAGTTCAGCTGGATGGTG
CGGCGGCACCACTGCAGGATATGTGGCCGCATCTTCTGTTACTACTGCTGCAACAACTACGTCCTGAGCA
AGCACGGTGGCAAAAAGGAGCGCTGCTGCCGAGCCTGTTTCCAGAAGCTCAGTGAAGGCCCTGGCTCCCC
TGATAGCAGTGGCTCAGGCACTAGCCAGGGAGAGCCCAGCCCTGCACTGTCACCAGCCTCACCTGGGCCC
CAGGCCACAGGAGGCCAAGGAGCAAATACAGACTACAGGCCACCGGACGACGCTGTGTTTGATATCATCA
CAGATGAGGAATTGTGCCAGATACAGGAGTCCGGCTCCTCTTTGCCTGAAACACCCACTGAAACTGATTC
TCTCGACCCAAATGCGGCTGAACAGGATACTACATCAACCTCGCTAACGCCTGAGGACACTGAAGACATG
CCCGTGGGGCAGGATTCGGAAATCTGCCTGCTGAAGTCTGGAGAACTGATGATCAAAGTACCCCTCACAG
TGGATGAGATCGCCAGCTTCGGGGAGGGTAGCAGGGAGCTGTTTGTGAGGTCCAGCACCTACAGCCTGAT
CCCCATCACTGTGGCCGAGGCAGGCCTCACCATCAGCTGGGTCTTCTCCTCTGACCCCAAGAGCATCTCC
TTCAGTGTGGTCTTCCAGGAGGCCGAGGACACACCGCTGGATCAGTGTAAGGTCCTCATTCCCACGACCC
GATGCAACTCCCACAAGGAGAACATCCAGGGCCAGCTCAAGGTTCGCACACCCGGCATCTACATGCTCAT
CTTCGACAATACCTTCTCAAGGTTTGTCTCTAAAAAGGTATTTTATCACTTGACGGTTGATCGGCCTGTG
ATCTACGATGGAAGTGATTTCCTGTAG

Translation (1478 aa):
MASTNAESQLQRIIRDLQDAVTELSKEFQEAGEPITDDSTSLHKFSYKLEYLLQFDQKEKATLLGNKKDY
WDYFCACLAKVKGANDGIRFVKSISELRTSLGKGRAFIRYSLVHQRLADTLQQCFMNTKVTSDWYYARSP
FLQPKLSSDIVGQLYELTEVQFDLASRGFDLDAAWPTFARRTLTTGSSAYLWKPPSRSSSMSSLVSSYLQ
TQEMVSNFDLNSPLNNEALEGFDEMRLELDQLEVREKQLRERMQQLDRENQELRAAVSQQGEQLQTERER
GRTAAEDNVRLTCLVAELQKQWEVTQATQNTVKELQTCLQGLELGAAEKEEDYHTALRRLESMLQPLAQE
LEATRDSLDKKNQHLASFPGWLAMAQQKADTASDTKGRQEPIPSDAAQEMQELGEKLQALERERTKVEEV
NRQQSAQLEQLVKELQLKEDARASLERLVKEMAPLQEELSGKGQEADQLWRRLQELLAHTSSWEEELAEL
RREKKQQQEEKELLEQEVRSLTRQLQFLETQLAQVSQHVSDLEEQKKQLIQDKDHLSQQVGMLERLAGPP
GPELPVAGEKNEALVPVNSSLQEAWGKPEEEQRGLQEAQLDDTKVQEGSQEEELRQANRELEKELQNVVG
RNQLLEGKLQALQADYQALQQRESAIQGSLASLEAEQASIRHLGDQMEASLLAVRKAKEAMKAQMAEKEA
ILQSKEGECQQLREEVEQCQQLAEARHRELRALESQCQQQTQLIEVLTAEKGQQGVGPPTDNEARELAAQ
LALSQAQLEVHQGEVQRLQAQVVDLQAKMRAALDDQDKVQSQLSMAEAVLREHKTLVQQLKEQNEALNRA
HVQELLQCSEREGALQEERADEAQQREEELRALQEELSQAKCSSEEAQLEHAELQEQLHRANTDTAELGI
QVCALTVEKERVEEALACAVQELQDAKEAASREREGLERQVAGLQQEKESLQEKLKAAKAAAGSLPGLQA
QLAQAEQRAQSLQEAAHQELNTLKFQLSAEIMDYQSRLKNAGEECKSLRGQLEEQGRQLQAAEEAVEKLK
ATQADMGEKLSCTSNHLAECQAAMLRKDKEGAALREDLERTQKELEKATTKIQEYYNKLCQEVTNRERND
QKMLADLDDLNRTKKYLEERLIELLRDKDALWQKSDALEFQQKLSAEERWLGDTEANHCLDCKREFSWMV
RRHHCRICGRIFCYYCCNNYVLSKHGGKKERCCRACFQKLSEGPGSPDSSGSGTSQGEPSPALSPASPGP
QATGGQGANTDYRPPDDAVFDIITDEELCQIQESGSSLPETPTETDSLDPNAAEQDTTSTSLTPEDTEDM
PVGQDSEICLLKSGELMIKVPLTVDEIASFGEGSRELFVRSSTYSLIPITVAEAGLTISWVFSSDPKSIS
FSVVFQEAEDTPLDQCKVLIPTTRCNSHKENIQGQLKVRTPGIYMLIFDNTFSRFVSKKVFYHLTVDRPV
IYDGSDFL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH