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Report for CCDS72896.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
72896.1 Public Homo sapiens 1 NBPF9 24 110 108 CCDS HistoryNCBI Gene:400818Re-query CCDS DB by CCDS ID:72896.1Re-query CCDS DB by GeneID:400818See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 72896.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000615421.4 ENSP00000477979.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000615421.4Link to Ensembl Protein Viewer:ENSP00000477979.1Re-query CCDS DB by Nucleotide ID:ENST00000615421Re-query CCDS DB by Protein ID:ENSP00000477979
Original member Current member EBI ENST00000698196.1 ENSP00000513601.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000698196.1Link to Ensembl Protein Viewer:ENSP00000513601.1Re-query CCDS DB by Nucleotide ID:ENST00000698196Re-query CCDS DB by Protein ID:ENSP00000513601
Original member Current member EBI ENST00000698832.1 ENSP00000513968.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000698832.1Link to Ensembl Protein Viewer:ENSP00000513968.1Re-query CCDS DB by Nucleotide ID:ENST00000698832Re-query CCDS DB by Protein ID:ENSP00000513968
Original member Current member NCBI NM_001277444.2 NP_001264373.1 Accepted alive Link to Nucleotide Sequence:NM_001277444.2Link to Protein Sequence:NP_001264373.1Re-query CCDS DB by Nucleotide ID:NM_001277444Re-query CCDS DB by Protein ID:NP_001264373Link to BLAST:NP_001264373.1
Original member Current member NCBI NM_001388366.1 NP_001375295.1 Accepted alive Link to Nucleotide Sequence:NM_001388366.1Link to Protein Sequence:NP_001375295.1Re-query CCDS DB by Nucleotide ID:NM_001388366Re-query CCDS DB by Protein ID:NP_001375295Link to BLAST:NP_001375295.1
Original member Current member NCBI NM_001388367.1 NP_001375296.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001388367.1Link to Protein Sequence:NP_001375296.1Re-query CCDS DB by Nucleotide ID:NM_001388367Re-query CCDS DB by Protein ID:NP_001375296Link to BLAST:NP_001375296.1
Original member Current member NCBI NM_001388368.1 NP_001375297.1 Accepted alive Link to Nucleotide Sequence:NM_001388368.1Link to Protein Sequence:NP_001375297.1Re-query CCDS DB by Nucleotide ID:NM_001388368Re-query CCDS DB by Protein ID:NP_001375297Link to BLAST:NP_001375297.1
Original member Current member NCBI NM_001388369.1 NP_001375298.1 Accepted alive Link to Nucleotide Sequence:NM_001388369.1Link to Protein Sequence:NP_001375298.1Re-query CCDS DB by Nucleotide ID:NM_001388369Re-query CCDS DB by Protein ID:NP_001375298Link to BLAST:NP_001375298.1
Original member Current member NCBI NM_001388370.1 NP_001375299.1 Accepted alive Link to Nucleotide Sequence:NM_001388370.1Link to Protein Sequence:NP_001375299.1Re-query CCDS DB by Nucleotide ID:NM_001388370Re-query CCDS DB by Protein ID:NP_001375299Link to BLAST:NP_001375299.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001264373.1 1111 P0DPF3-1 1111 100% 0 0
NP_001375295.1 1111 P0DPF3-1 1111 100% 0 0
NP_001375296.1 1111 P0DPF3-1 1111 100% 0 0
NP_001375297.1 1111 P0DPF3-1 1111 100% 0 0
NP_001375298.1 1111 P0DPF3-1 1111 100% 0 0
NP_001375299.1 1111 P0DPF3-1 1111 100% 0 0

Chromosomal Locations for CCDS 72896.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 149055656 149055899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 149056512 149056620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 149057335 149057507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 149058164 149058215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 149058925 149059097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 149059700 149059808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 149060523 149060695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 149061332 149061383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 149062093 149062265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 149062862 149062913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 149063633 149063805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 149064431 149064482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 149065526 149065689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 149069594 149069645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 149070934 149071139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 149071604 149071676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 149072718 149072932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 149073768 149073870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 149075655 149075864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 149077208 149077419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 149077883 149077955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 149079007 149079221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 149080053 149080155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 149081965 149082139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3336 nt):
ATGGTGGTATCAGCCGGCCCTTGGTCCAGCGAGAAGGCAGAGATGAACATTCTAGAAATCAACGAGAAAT
TGCGCCCCCAGTTGGCAGAGAACAAACAGCAGTTCGGAAACCTCAAAGAGAGATGTTTTCTAACTCAACT
GGCCGGCTTCCTGGCCAACCGACAGAAGAAATACAAGTATGAAGAGTGTAAAGACCTCATAAAATTTATG
CTGAGGAATGAGCGACAGTTCAAGGAGGAGAAGCTTGCAGAGCAGCTGAAGCAAGCTGAGGAGCTCAGGC
AATATAAAGTCCTGGTTCACTCTCAGGAACGAGAGCTGACGCAGTTAAAGGAGAAGTTACGGGAAGGGAG
AGATGCCTCCCGCTCATTGAATGAGCATCTCCAGGCCCTCCTCACTCCGGATGAGCCGGACAAGTCCCAG
GGGCAGGACCTCCAAGAACAGCTGGCTGAGGGGTGTAGACTGGCACAGCACCTTGTCCAAAAGCTCAGCC
CAGAAAATGACGAAGATGAGGATGAAGATGTTCAAGTTGAGGAGGATGAGAAAGTACTGGAATCATCTGC
CCCCAGGGAGGTGCAGAAGGCTGAAGAGAGCAAAGTCGCTGAGGACTCACTGGAGGAATGTGCCATCACT
TGTTCAAATAGCCACGGCCCTTGTGACTCCAACCAGCCTCACAAGAACATCAAAATCACATTTGAGGAAG
ACGAAGTCAACTCAACTCTGGTTGTAGACAGAGAATCCTCTCATGATGAATGTCAGGATGCTCTAAACAT
TCTCCCAGTCCCTGGCCCCACCTCTTCTGCCACAAACGTCAGCATGGTGGTATCAGCCGGCCCTTTGTCC
AGCGAGAAGGCAGAGATGAACATTCTAGAAATCAATGAGAAATTGCGCCCCCAGCTGGCAGAGAAGAAAC
AGCAGTTCAGAAACCTCAAAGAGAAATGTTTTCTAACTCAACTGGCCGGCTTCCTGGCCAACCAGCAGAA
CAAATACAAGTATGAAGAGTGTAAAGACCTCATAAAATTTATGCTGAGGAATGAGCGACAGTTCAAGGAG
GAGAAGCTTGCAGAGCAGCTGAAGCAAGCTGAGGAGCTCAGGCAATATAAAGTCCTGGTTCACGCTCAGG
AACGAGAGCTGACCCAGTTAAGGGAGAAGTTGCGGGAAGGGAGAGATGCCTCCCGCTCATTGAATGAGCA
TCTCCAGGCCCTCCTCACTCCGGATGAGCCGGACAAGTCCCAGGGGCAGGACCTCCAAGAACAGCTGGCT
GAGGGGTGTAGACTGGCACAGCACCTTGTCCAAAAGCTCAGCCCAGAAAATGACAACGATGACGATGAAG
ATGTTCAAATTGAGGTGGCTGAGAAAGTGCAGAAATCGTCTGCCCCCAGGGAGATGCAGAAGGCTGAAGA
AAAGGAAGTCCCTGAGGACTCACTGGAGGAATGTGCCATCACTTATTCAAATAGCCATGGCCCTTATGAC
TCCAACCAGCCACATAGGAAAACCAAAATCACATTTGAGGAAGACAAAGTCGACTCAACTCTCATTGGCT
CATCCTCTCATGTTGAACGGGAAGATGCTGTACACATTATTCCAGAAAATGAAAGTGATGATGAGGAAGA
GGAAGAAAAAGGGCCAGTGTCTCCCAGGAATCTGCAGGAGTCTGAAGAGGAGGAAGTCCCCCAGGAGTCC
TGGGATGAAGGTTATTCGACTCCCTCAATTCCTCCTGAAATGTTGGCCTCGTACAAGTCTTACAGCAGCA
CATTTCACTCATTAGAGGAACAGCAAGTCTGCATGGCTGTTGACATAGGCAGACATCGGTGGGATCAAGT
GAAAAAGGAGGACCAAGAGGCAACAGGTCCCAGGCTCAGCAGGGAGCTGCTGGATGAGAAAGGGCCTGAA
GTCTTGCAGGACTCACTGGATAGATGTTATTCAACTCCTTCAGGTTGTCTTGAACTGACTGACTCATGCC
AGCCCTACAGAAGTGCCTTTTACGTATTGGAGCAACAGCGTGTTGGCTTGGCTGTTGACATGGATGAAAT
TGAAAAGTACCAAGAAGTGGAAGAAGACCAAGACCCATCATGCCCCAGGCTCAGCAGGGAGCTGCTGGAT
GAGAAAGAGCCTGAAGTCTTGCAGGACTCACTGGGTAGATGGTATTCGACTCCTTCAGGTTATCTTGAAC
TGCCTGACTTAGGCCAGCCCTACAGCAGTGCTGTTTACTCATTGGAGGAACAGTACCTTGGCTTGGCTCT
TGACTTGGACAGAATTAAAAAGGACCAAGAAGAGGAAGAAGACCAAGGCCCACCATGCCCCAGGCTCAGC
AGGGAGCTGCTGGAGGTAGTAGAGCCTGAAGTCTTGCAGGACTCACTGGATAGATGTTATTCAACTCCTT
CCAGTTGTCTTGAACAGCCTGACTCCTGCCAGCCCTATGGAAGTTCCTTTTATGCATTGGAGGAAAAACA
TGTTGGCTTTTCTCTTGACGTGGGAGAAATTGAAAAGAAGGGGAAGGGGAAGAAAAGAAGGGGAAGAAGA
TCAAAGAAGAAAAGAAGAAGGGGAAGAAAAGAAGGGGAAGAAAATCAAAACCCACCATGCCCCAGGCTCA
GCAGGGAGCTGCTGGATGAGAAAGAGCCTGAAGTCTTGCAGGACTCACTGGATAGATGTTATTCGACTCC
TTCAGGTTATCTTGAACTGCCTGACTTAGGCCAGCCCTACAGCAGTGCTGTTTACTCATTGGAGGAACAG
TACCTTGGCTTGGCTCTTGACGTGGACAGAATTAAAAAGGACCAAGAAGAGGAAGAAGACCAAGGCCCAC
CATGCCCCAGGCTCAGCAGGGAGCTGCTGGAGGTAGTAGAGCCTGAAGTCTTGCAGGACTCACTGGATAG
ATGTTATTCAACTCCTTCCAGTTGTCTTGAACAGCCTGACTCCTGCCAGCCCTATGGAAGTTCCTTTTAT
GCATTGGAGGAAAAACATGTTGGCTTTTCTCTTGACGTGGGAGAAATTGAAAAGAAGGGGAAGGGGAAGA
AAAGAAGGGGAAGAAGATCAAAGAAGGAAAGAAGAAGGGGAAGAAAAGAAGGGGAAGAAGATCAAAACCC
ACCATGCCCCAGGCTCAACGGCGTGCTGATGGAAGTGGAAGAGCCTGAAGTCTTGCAGGACTCACTGGAT
GGATGTTATTCTACTCCGTCAATGTACTTTGAACTACCTGACTCATTCCAGCACTACAGAAGTGTGTTTT
ACTCATTTGAGGAACAGCACATCAGCTTCGCCCTTTACGTGGACAATAGGTTTTTTACTTTGACGGTGAC
AAGTCTCCACCTGGTGTTCCAGATGGAAGTCATATTCCCACAATAA

Translation (1111 aa):
MVVSAGPWSSEKAEMNILEINEKLRPQLAENKQQFGNLKERCFLTQLAGFLANRQKKYKYEECKDLIKFM
LRNERQFKEEKLAEQLKQAEELRQYKVLVHSQERELTQLKEKLREGRDASRSLNEHLQALLTPDEPDKSQ
GQDLQEQLAEGCRLAQHLVQKLSPENDEDEDEDVQVEEDEKVLESSAPREVQKAEESKVAEDSLEECAIT
CSNSHGPCDSNQPHKNIKITFEEDEVNSTLVVDRESSHDECQDALNILPVPGPTSSATNVSMVVSAGPLS
SEKAEMNILEINEKLRPQLAEKKQQFRNLKEKCFLTQLAGFLANQQNKYKYEECKDLIKFMLRNERQFKE
EKLAEQLKQAEELRQYKVLVHAQERELTQLREKLREGRDASRSLNEHLQALLTPDEPDKSQGQDLQEQLA
EGCRLAQHLVQKLSPENDNDDDEDVQIEVAEKVQKSSAPREMQKAEEKEVPEDSLEECAITYSNSHGPYD
SNQPHRKTKITFEEDKVDSTLIGSSSHVEREDAVHIIPENESDDEEEEEKGPVSPRNLQESEEEEVPQES
WDEGYSTPSIPPEMLASYKSYSSTFHSLEEQQVCMAVDIGRHRWDQVKKEDQEATGPRLSRELLDEKGPE
VLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQRVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLD
EKEPEVLQDSLGRWYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDLDRIKKDQEEEEDQGPPCPRLS
RELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRR
SKKKRRRGRKEGEENQNPPCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQ
YLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFY
ALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLNGVLMEVEEPEVLQDSLD
GCYSTPSMYFELPDSFQHYRSVFYSFEEQHISFALYVDNRFFTLTVTSLHLVFQMEVIFPQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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