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Report for CCDS72872.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
72872.1 Public Homo sapiens 1 RBM8A 24 110 108 CCDS HistoryNCBI Gene:9939Re-query CCDS DB by CCDS ID:72872.1Re-query CCDS DB by GeneID:9939See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 72872.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000583313.7 ENSP00000463058.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000583313.7Link to Ensembl Protein Viewer:ENSP00000463058.2Re-query CCDS DB by Nucleotide ID:ENST00000583313Re-query CCDS DB by Protein ID:ENSP00000463058
Original member Current member EBI ENST00000632555.1 ENSP00000488265.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000632555.1Link to Ensembl Protein Viewer:ENSP00000488265.1Re-query CCDS DB by Nucleotide ID:ENST00000632555Re-query CCDS DB by Protein ID:ENSP00000488265
Original member Current member EBI ENST00000691760.1 ENSP00000510519.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000691760.1Link to Ensembl Protein Viewer:ENSP00000510519.1Re-query CCDS DB by Nucleotide ID:ENST00000691760Re-query CCDS DB by Protein ID:ENSP00000510519
Original member Current member NCBI NM_005105.5 NP_005096.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005105.5Link to Protein Sequence:NP_005096.1Re-query CCDS DB by Nucleotide ID:NM_005105Re-query CCDS DB by Protein ID:NP_005096Link to BLAST:NP_005096.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005096.1 174 Q9Y5S9-1 174 100% 0 0

Chromosomal Locations for CCDS 72872.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 145925882 145925927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 145926041 145926177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 145926482 145926618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 145926809 145926886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 145927018 145927077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 145927360 145927426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (525 nt):
ATGGCGGACGTGCTAGATCTTCACGAGGCTGGGGGCGAAGATTTCGCCATGGATGAGGATGGGGACGAGA
GCATTCACAAACTGAAAGAAAAAGCGAAGAAACGGAAGGGTCGCGGCTTTGGCTCCGAAGAGGGGTCCCG
AGCGCGGATGCGTGAGGATTATGACAGCGTGGAGCAGGATGGCGATGAACCCGGACCACAACGCTCTGTT
GAAGGCTGGATTCTCTTTGTAACTGGAGTCCATGAGGAAGCCACCGAAGAAGACATACACGACAAATTCG
CAGAATATGGGGAAATTAAAAACATTCATCTCAACCTCGACAGGCGAACAGGATATCTGAAGGGGTATAC
TCTAGTTGAATATGAAACATACAAGGAAGCCCAGGCTGCTATGGAGGGACTCAATGGCCAGGATTTGATG
GGACAGCCCATCAGCGTTGACTGGTGTTTTGTTCGGGGTCCACCAAAAGGCAAGAGGAGAGGTGGCCGAA
GACGCAGCAGAAGTCCAGACCGGAGACGTCGCTGA

Translation (174 aa):
MADVLDLHEAGGEDFAMDEDGDESIHKLKEKAKKRKGRGFGSEEGSRARMREDYDSVEQDGDEPGPQRSV
EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLM
GQPISVDWCFVRGPPKGKRRGGRRRSRSPDRRRR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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