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Report for CCDS21828.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21828.1 Public Mus musculus 7 Cd19 23 108 98 CCDS HistoryNCBI Gene:12478Re-query CCDS DB by CCDS ID:21828.1Re-query CCDS DB by GeneID:12478See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21828.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000206325.1 ENSMUSP00000145803.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000206325.1Link to Ensembl Protein Viewer:ENSMUSP00000145803.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000206325Re-query CCDS DB by Protein ID:ENSMUSP00000145803
Original member NCBI NM_009844.2 NP_033974.2 Updated not alive Link to Nucleotide Sequence:NM_009844.2Link to Protein Sequence:NP_033974.2Re-query CCDS DB by Nucleotide ID:NM_009844Re-query CCDS DB by Protein ID:NP_033974
Current member NCBI NM_009844.3 NP_033974.2 Accepted alive Link to Nucleotide Sequence:NM_009844.3Link to Protein Sequence:NP_033974.2Re-query CCDS DB by Nucleotide ID:NM_009844Re-query CCDS DB by Protein ID:NP_033974Link to BLAST:NP_033974.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033974.2 547 P25918 547 100% 0 0

Chromosomal Locations for CCDS 21828.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 126409372 126409463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126409584 126409670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126410337 126410393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126410485 126410541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126410640 126410708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126410797 126410898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126411019 126411120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126411441 126411529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126411782 126411830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126412071 126412181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126413391 126413669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126413791 126413985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126414261 126414527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126414749 126414836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1644 nt):
ATGCCATCTCCTCTCCCTGTCTCCTTCCTCCTCTTTCTTACCTTAGTAGGAGGCAGGCCCCAGAAGTCCT
TACTGGTGGAGGTAGAAGAGGGAGGCAATGTTGTGCTGCCATGCCTCCCGGACTCCTCACCTGTCTCTTC
TGAGAAGCTGGCTTGGTATCGAGGTAACCAGTCAACACCCTTCCTGGAGCTGAGCCCCGGGTCCCCTGGC
CTGGGATTGCACGTGGGGTCCCTGGGCATCTTGCTAGTGATTGTCAATGTCTCAGACCATATGGGGGGCT
TCTACCTGTGCCAGAAGAGGCCCCCTTTCAAGGACATCTGGCAGCCTGCCTGGACAGTGAACGTGGAGGA
TAGTGGGGAGATGTTCCGGTGGAATGCTTCAGACGTCAGGGACCTGGACTGTGACCTAAGGAACAGGTCC
TCTGGGAGCCACAGGTCCACTTCTGGTTCCCAGCTGTATGTGTGGGCTAAAGACCATCCTAAGGTCTGGG
GAACAAAGCCTGTATGTGCCCCTCGGGGGAGCAGTTTGAATCAGAGTCTAATCAACCAAGATCTCACTGT
GGCACCCGGCTCCACACTTTGGCTGTCCTGTGGGGTACCCCCTGTCCCAGTGGCCAAAGGCTCCATCTCC
TGGACCCATGTGCATCCTAGGAGACCTAATGTTTCACTACTGAGCCTAAGCCTTGGGGGAGAGCACCCGG
TCAGAGAGATGTGGGTTTGGGGGTCTCTTCTGCTTCTGCCCCAAGCCACAGCTTTAGATGAAGGCACCTA
TTATTGTCTCCGAGGAAACCTGACCATCGAGAGGCACGTGAAGGTCATTGCAAGGTCAGCAGTGTGGCTC
TGGCTGTTGAGAACTGGTGGATGGATAGTCCCAGTGGTGACTTTAGTATATGTCATCTTCTGTATGGTTT
CTCTGGTGGCTTTTCTCTATTGTCAAAGAGCCTTTATCCTGAGAAGGAAAAGGAAGCGAATGACTGACCC
CGCCAGGAGATTCTTCAAAGTGACGCCTCCCTCGGGAAACGGGACCCAGAACCAGTACGGGAATGTGCTC
TCCCTTCCTACATCTACCTCTGGCCAGGCCCATGCTCAGCGTTGGGCTGCTGGCCTAGGGAGTGTCCCTG
GGTCCTATGGAAATCCACGCATTCAAGTCCAGGATACTGGAGCTCAGAGCCATGAAACAGGACTGGAAGA
AGAAGGGGAGGCCTATGAAGAGCCAGACAGCGAGGAGGGCTCTGAATTCTATGAGAACGACTCCAACCTT
GGGCAGGACCAGGTTTCCCAGGATGGGAGTGGCTATGAGAACCCCGAGGATGAGCCCATGGGTCCAGAGG
AAGAAGACTCCTTCTCCAATGCTGAGTCTTATGAAAATGCAGATGAGGAGCTGGCCCAACCAGTTGGCAG
GATGATGGACTTCCTGAGCCCCCATGGGTCTGCGTGGGACCCCAGCCGGGAAGCATCCTCGCTTGGGTCC
CAGTCCTATGAAGATATGAGAGGGATCCTCTATGCAGCTCCTCAGCTCCACTCAATTCAGTCCGGTCCCA
GTCATGAAGAAGATGCAGACTCTTATGAAAACATGGATAAGTCTGACGACCTAGAACCAGCATGGGAAGG
AGAGGGCCACATGGGGACTTGGGGAACCACGTGA

Translation (547 aa):
MPSPLPVSFLLFLTLVGGRPQKSLLVEVEEGGNVVLPCLPDSSPVSSEKLAWYRGNQSTPFLELSPGSPG
LGLHVGSLGILLVIVNVSDHMGGFYLCQKRPPFKDIWQPAWTVNVEDSGEMFRWNASDVRDLDCDLRNRS
SGSHRSTSGSQLYVWAKDHPKVWGTKPVCAPRGSSLNQSLINQDLTVAPGSTLWLSCGVPPVPVAKGSIS
WTHVHPRRPNVSLLSLSLGGEHPVREMWVWGSLLLLPQATALDEGTYYCLRGNLTIERHVKVIARSAVWL
WLLRTGGWIVPVVTLVYVIFCMVSLVAFLYCQRAFILRRKRKRMTDPARRFFKVTPPSGNGTQNQYGNVL
SLPTSTSGQAHAQRWAAGLGSVPGSYGNPRIQVQDTGAQSHETGLEEEGEAYEEPDSEEGSEFYENDSNL
GQDQVSQDGSGYENPEDEPMGPEEEDSFSNAESYENADEELAQPVGRMMDFLSPHGSAWDPSREASSLGS
QSYEDMRGILYAAPQLHSIQSGPSHEEDADSYENMDKSDDLEPAWEGEGHMGTWGTT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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