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Report for CCDS17805.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17805.1 Public Mus musculus 3 F3 23 108 98 CCDS HistoryNCBI Gene:14066Re-query CCDS DB by CCDS ID:17805.1Re-query CCDS DB by GeneID:14066See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17805.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029771.12 ENSMUSP00000029771.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029771.12Link to Ensembl Protein Viewer:ENSMUSP00000029771.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000029771Re-query CCDS DB by Protein ID:ENSMUSP00000029771
Original member Current member NCBI NM_010171.3 NP_034301.3 Accepted alive Link to Nucleotide Sequence:NM_010171.3Link to Protein Sequence:NP_034301.3Re-query CCDS DB by Nucleotide ID:NM_010171Re-query CCDS DB by Protein ID:NP_034301Link to BLAST:NP_034301.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034301.3 294 P20352 294 99.6599% 0 1

Chromosomal Locations for CCDS 17805.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 121723715 121723802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 121724977 121725082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 121729337 121729554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 121731524 121731702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 121732381 121732540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 121734106 121734239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (885 nt):
ATGGCGATCCTCGTGCGCCCGCGCCTCCTAGCGGCTCTCGCGCCCACGTTTCTCGGCTGCCTCCTCCTCC
AGGTGACCGCGGGTGCAGGCATTCCAGAGAAAGCGTTTAATTTAACTTGGATATCAACTGATTTCAAGAC
AATTTTGGAGTGGCAACCCAAACCCACCAACTATACCTACACTGTACAGATAAGTGATCGATCTAGAAAC
TGGAAAAACAAGTGCTTCTCGACCACAGACACCGAGTGCGACCTCACAGACGAGATCGTGAAGGATGTGA
CCTGGGCCTATGAAGCAAAGGTCCTCTCTGTCCCACGGAGGAACTCAGTTCATGGAGACGGAGACCAACT
TGTGATTCATGGGGAGGAGCCGCCATTTACAAACGCCCCAAAGTTTTTACCTTACCGAGACACAAACCTT
GGACAGCCAGTAATTCAGCAGTTTGAACAAGATGGTAGAAAACTGAACGTGGTTGTAAAAGACTCACTTA
CATTAGTCAGAAAGAATGGTACATTCCTCACCCTGCGGCAAGTCTTTGGCAAGGACTTGGGTTATATAAT
TACTTATCGGAAAGGCTCAAGCACGGGAAAGAAAACAAACATTACAAACACCAATGAATTCTCGATTGAT
GTGGAAGAAGGAGTAAGCTACTGCTTTTTTGTACAAGCTATGATTTTCTCCAGGAAAACTAACCAAAATA
GCCCAGGAAGCAGTACAGTGTGCACCGAGCAATGGAAGAGTTTCCTGGGAGAAACACTCATCATTGTGGG
AGCAGTGGTGCTCCTGGCCACCATCTTTATCATCCTCCTGTCCATATCTCTGTGCAAGCGCAGAAAGAAC
CGAGCGGGACAGAAAGGGAAGAACACCCCGTCGCGCTTGGCATAG

Translation (294 aa):
MAILVRPRLLAALAPTFLGCLLLQVTAGAGIPEKAFNLTWISTDFKTILEWQPKPTNYTYTVQISDRSRN
WKNKCFSTTDTECDLTDEIVKDVTWAYEAKVLSVPRRNSVHGDGDQLVIHGEEPPFTNAPKFLPYRDTNL
GQPVIQQFEQDGRKLNVVVKDSLTLVRKNGTFLTLRQVFGKDLGYIITYRKGSSTGKKTNITNTNEFSID
VEEGVSYCFFVQAMIFSRKTNQNSPGSSTVCTEQWKSFLGETLIIVGAVVLLATIFIILLSISLCKRRKN
RAGQKGKNTPSRLA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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