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Report for CCDS29133.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29133.1 Public Mus musculus 18 Gfra3 23 108 98 CCDS HistoryNCBI Gene:14587Re-query CCDS DB by CCDS ID:29133.1Re-query CCDS DB by GeneID:14587See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29133.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025224.8 ENSMUSP00000025224.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025224.8Link to Ensembl Protein Viewer:ENSMUSP00000025224.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000025224Re-query CCDS DB by Protein ID:ENSMUSP00000025224
Original member Current member NCBI NM_010280.4 NP_034410.3 Accepted alive Link to Nucleotide Sequence:NM_010280.4Link to Protein Sequence:NP_034410.3Re-query CCDS DB by Nucleotide ID:NM_010280Re-query CCDS DB by Protein ID:NP_034410Link to BLAST:NP_034410.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034410.3 397 O35118 397 100% 0 0

Chromosomal Locations for CCDS 29133.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 34690534 34690623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 34690816 34690904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 34691265 34691399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 34691549 34691652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 34695564 34695876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 34704481 34704573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 34711116 34711403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 34720139 34720220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1194 nt):
ATGGGGCTCTCCTGGAGCCCGCGACCTCCACTGCTGATGATCCTGCTACTGGTGCTGTCGTTGTGGCTGC
CACTTGGAGCAGGAAACTCCCTTGCCACAGAGAACAGGTTTGTGAACAGCTGTACCCAGGCCAGAAAGAA
ATGCGAGGCTAATCCCGCTTGCAAGGCTGCCTACCAGCACCTGGGCTCCTGCACCTCCAGTTTAAGCAGG
CCGCTGCCCTTAGAGGAGTCTGCCATGTCTGCAGACTGCCTAGAGGCAGCAGAACAACTCAGGAACAGCT
CTCTGATAGACTGCAGGTGCCATCGGCGCATGAAGCACCAAGCTACCTGTCTGGACATTTATTGGACCGT
TCACCCTGCCCGAAGCCTTGGTGACTACGAGTTGGATGTCTCACCCTATGAAGACACAGTGACCAGCAAA
CCCTGGAAAATGAATCTTAGCAAGTTGAACATGCTCAAACCAGACTCGGACCTCTGCCTCAAATTTGCTA
TGCTGTGTACTCTTCACGACAAGTGTGACCGCCTGCGCAAGGCCTACGGGGAGGCATGCTCAGGGATCCG
CTGCCAGCGCCACCTCTGCCTAGCCCAGCTGCGCTCCTTCTTTGAGAAGGCAGCAGAGTCCCACGCTCAG
GGTCTGCTGCTGTGTCCCTGTGCACCAGAAGATGCGGGCTGTGGGGAGCGGCGGCGTAACACCATCGCCC
CCAGTTGCGCCCTGCCTTCTGTAACCCCCAATTGCCTGGATCTGCGGAGCTTCTGCCGTGCGGACCCTTT
GTGCAGATCACGCCTGATGGACTTCCAGACCCACTGTCATCCTATGGACATCCTTGGGACTTGTGCAACT
GAGCAGTCCAGATGTCTGCGGGCATACCTGGGGCTGATTGGGACTGCCATGACCCCAAACTTCATCAGCA
AGGTCAACACTACTGTTGCCTTAAGCTGCACCTGCCGAGGCAGCGGCAACCTACAGGACGAGTGTGAACA
GCTGGAAAGGTCCTTCTCCCAGAACCCCTGCCTCGTGGAGGCCATTGCAGCTAAGATGCGTTTCCACAGA
CAGCTCTTCTCCCAGGACTGGGCAGACTCTACTTTTTCAGTGGTGCAGCAGCAGAACAGCAACCCTGCTC
TGAGACTGCAGCCCAGGCTACCCATTCTTTCTTTCTCCATCCTTCCCTTGATTCTGCTGCAGACCCTCTG
GTAG

Translation (397 aa):
MGLSWSPRPPLLMILLLVLSLWLPLGAGNSLATENRFVNSCTQARKKCEANPACKAAYQHLGSCTSSLSR
PLPLEESAMSADCLEAAEQLRNSSLIDCRCHRRMKHQATCLDIYWTVHPARSLGDYELDVSPYEDTVTSK
PWKMNLSKLNMLKPDSDLCLKFAMLCTLHDKCDRLRKAYGEACSGIRCQRHLCLAQLRSFFEKAAESHAQ
GLLLCPCAPEDAGCGERRRNTIAPSCALPSVTPNCLDLRSFCRADPLCRSRLMDFQTHCHPMDILGTCAT
EQSRCLRAYLGLIGTAMTPNFISKVNTTVALSCTCRGSGNLQDECEQLERSFSQNPCLVEAIAAKMRFHR
QLFSQDWADSTFSVVQQQNSNPALRLQPRLPILSFSILPLILLQTLW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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