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Report for CCDS5882.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5882.1 Public Homo sapiens 7 FAM131B 24 110 108 CCDS HistoryNCBI Gene:9715Re-query CCDS DB by CCDS ID:5882.1Re-query CCDS DB by GeneID:9715See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5882.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000409346.5 ENSP00000386984.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409346.5Link to Ensembl Protein Viewer:ENSP00000386984.1Re-query CCDS DB by Nucleotide ID:ENST00000409346Re-query CCDS DB by Protein ID:ENSP00000386984
Original member Current member EBI ENST00000409408.5 ENSP00000387017.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409408.5Link to Ensembl Protein Viewer:ENSP00000387017.1Re-query CCDS DB by Nucleotide ID:ENST00000409408Re-query CCDS DB by Protein ID:ENSP00000387017
Original member Current member EBI ENST00000409222.7 ENSP00000387147.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409222.7Link to Ensembl Protein Viewer:ENSP00000387147.3Re-query CCDS DB by Nucleotide ID:ENST00000409222Re-query CCDS DB by Protein ID:ENSP00000387147
Original member Current member NCBI NM_001371250.1 NP_001358179.1 Accepted alive Link to Nucleotide Sequence:NM_001371250.1Link to Protein Sequence:NP_001358179.1Re-query CCDS DB by Nucleotide ID:NM_001371250Re-query CCDS DB by Protein ID:NP_001358179Link to BLAST:NP_001358179.1
Original member Current member NCBI NM_014690.5 NP_055505.3 Accepted alive Link to Nucleotide Sequence:NM_014690.5Link to Protein Sequence:NP_055505.3Re-query CCDS DB by Nucleotide ID:NM_014690Re-query CCDS DB by Protein ID:NP_055505Link to BLAST:NP_055505.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001358179.1 332 Q86XD5-1 332 100% 0 0
NP_055505.3 332 Q86XD5-1 332 100% 0 0

Chromosomal Locations for CCDS 5882.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 143356550 143357022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143357280 143357423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143358827 143359024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143359326 143359419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143359732 143359767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143360040 143360093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (999 nt):
ATGGACAGCACCAGCTCACTGCACGGGAGCAGCCTCCATCGGCCATCGACTGAGCAAACTCGAACTGATT
TCTCCTGGGACGGCATCAACCTCTCCATGGAGGACACCACTTCCATTCTTCCGAAGCTTAAGCGAAACTC
TAACGCCTATGGCATTGGGGCCCTGGCCAAGTCATCATTCTCAGGGATCTCACGGAGCATGAAGGACCAT
GTGACAAAGCCCACAGCCATGGGGCAAGGCCGGGTGGCCCACATGATTGAGTGGCAGGGCTGGGGGAAGA
CACCAGCTGTTCAGCCACAACACAGCCATGAGTCCGTGCGCAGGGATACGGATGCCTACTCCGACCTCAG
CGATGGCGAGAAGGAGGCACGTTTTCTAGCAGGCGTCATGGAGCAGTTTGCTATCTCTGAGGCCACACTC
ATGGCCTGGTCTTCCATGGATGGTGAGGACATGAGTGTGAACTCCACCCAGGAGCCATTGGGCTGCAACT
ACAGTGACAACTACCAGGAACTGATGGACAGTCAGGATGCCCTGGCTCAAGCACCCATGGATGGATGGCC
TCACTCTTACGTGTCCCAGGGTATGTACTGTCTGGGGTCGTCAGATGCCTGGGAAGCCAGCGATCAGTCC
CTCATTGCCTCTCCGGCCACAGGATCCTATCTTGGGCCTGCATTTGATGACTCACAACCCAGCTTGCATG
AAATGGGACCTTCCCAACCAGCTTCAGGATACTCTGCTCTGGAGCCTCCACCTTTGCTGGGGGGAGACAC
TGACTGGGCTCCGGGGGTAGGCGCAGTGGACCTGGCAAGGGGCCCTGCTGAGGAGGAGAAGAGGCCATTG
GCACCTGAGGAGGAAGAGGATGCGGGATGCCGGGACCTGGAGTCACTTTCCCCACGAGAAGACCCTGAGA
TGTCTACCGCTCTCAGCCGGAAGGTGTCTGACGTCACATCCTCAGGTGTGCAGTCCTTTGATGAGGAGGA
AGGCGAGGCCAACAACTAG

Translation (332 aa):
MDSTSSLHGSSLHRPSTEQTRTDFSWDGINLSMEDTTSILPKLKRNSNAYGIGALAKSSFSGISRSMKDH
VTKPTAMGQGRVAHMIEWQGWGKTPAVQPQHSHESVRRDTDAYSDLSDGEKEARFLAGVMEQFAISEATL
MAWSSMDGEDMSVNSTQEPLGCNYSDNYQELMDSQDALAQAPMDGWPHSYVSQGMYCLGSSDAWEASDQS
LIASPATGSYLGPAFDDSQPSLHEMGPSQPASGYSALEPPPLLGGDTDWAPGVGAVDLARGPAEEEKRPL
APEEEEDAGCRDLESLSPREDPEMSTALSRKVSDVTSSGVQSFDEEEGEANN


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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