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Report for CCDS35298.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35298.1 Public Homo sapiens X IQSEC2 24 110 108 CCDS HistoryNCBI Gene:23096Re-query CCDS DB by CCDS ID:35298.1Re-query CCDS DB by GeneID:23096See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35298.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000375365.2 ENSP00000364514.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000375365.2Link to Ensembl Protein Viewer:ENSP00000364514.2Re-query CCDS DB by Nucleotide ID:ENST00000375365Re-query CCDS DB by Protein ID:ENSP00000364514
Original member Current member NCBI NM_015075.2 NP_055890.1 Accepted alive Link to Nucleotide Sequence:NM_015075.2Link to Protein Sequence:NP_055890.1Re-query CCDS DB by Nucleotide ID:NM_015075Re-query CCDS DB by Protein ID:NP_055890Link to BLAST:NP_055890.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055890.1 949 Q5JU85-3 949 100% 0 0

Chromosomal Locations for CCDS 35298.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 53235171 53235184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 53236322 53236495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 53238145 53238306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 53239195 53239294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 53241784 53241909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 53243332 53243471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 53246969 53247135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 53248114 53248236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 53248721 53248882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 53250279 53251174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 53254530 53254931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 53255800 53256061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 53279564 53279659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 53281496 53281521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2850 nt):
ATGGAGCCCCCCGGGAGGAGCAGCAGGTCCACAGCGTCTCATACTCTACACCAGTATTGCTGTCCTACTC
AGGTCCTTGACTCCATGAAGCTTACCCCCTCAGGCAGGCTGGCAGAGAGCAGTGTGGAGGGTGATGCCCC
AGGCAGTGACCTGAGCACAGCGGTTGATAGTCCTGGGAGCCAACCCCCCTACCGGCTGAGCCAGCTGCCC
CCCTCCAGCAGCCACATGGGGGGCCCCCCTGCTGGAGTGGGCCTTCCCTGGGCTCAGCGGGCACGCCTCC
AGCCAGCCAGTGTCGCCCTGAGGAAGCAGGAGGAGGAGGAGATAAAGCGCTCCAAGGCCCTATCGGACAG
CTATGAACTCTCCACAGACCTGCAGGACAAGAAGGTGGAAATGCTGGAGAGGAAGTATGGGGGCTCCTTC
CTGAGCCGCAGGGCTGCCAGGACCATCCAGACAGCCTTCCGCCAGTACCGCATGAACAAGAACTTTGAGC
GGCTACGCAGCTCAGCCTCAGAGAGCCGCATGTCCCGCCGCATCATCCTTTCCAACATGCGGATGCAGTT
CTCCTTTGAGGAGTATGAGAAGGCACAGAACCCCGCGTACTTCGAGGGCAAGCCTGCCTCGCTGGACGAG
GGTGCCATGGCTGGTGCCCGGAGCCACCGGCTTGAACGGGGGCTCCCATATGGAGGCTCCTGTGGTGGGG
GCATCGATGGTGGTGGAAGCTCCGTCACCACATCTGGAGAGTTTTCTAATGACATCACAGAACTTGAGGA
CTCCTTCTCCAAACAGGTAAAGTCTCTGGCTGAATCCATCGACGAAGCCCTGAACTGCCACCCGTCAGGG
CCCATGTCTGAGGAGCCAGGGTCAGCCCAGCTGGAGAAGCGGGAGTCAAAGGAACAGCAAGAGGACAGCT
CAGCCACATCCTTCAGTGATCTTCCCCTCTACCTGGATGACACAGTTCCCCAACAATCCCCTGAGCGACT
GCCCAGCACAGAACCCCCACCCCAGGGCCGGCCCGAGTTCTGGGCGCCAGCCCCTCTCCCGCCAGTTCCT
CCACCAGTGCCATCAGGAACCCGGGAAGACGGTAGCCGTGAGGAAGGCACTCGCAGGGGTCCCGGGTGCT
TGGAGTGCCGGGATTTCCGGCTGCGGGCTGCCCACCTTCCCCTGCTTACCATTGAGCCTCCTAGTGACAG
CTCCGTGGACCTGAGTGACCGCTCAGATCGCGGCTCTGTCCACCGCCAGCTGGTGTATGAGGCTGATGGC
TGCAGCCCCCATGGGACCCTGAAGCACAAGGGGCCACCAGGCAGGGCCCCGATCCCACACCGCCACTACC
CAGCCCCTGAAGGCCCAGCCCCAGCCCCACCAGGGCCCCTGCCACCAGCCCCCAACAGTGGCACTGGGCC
CAGTGGTGTGGCTGGGGGTCGGAGGTTGGGGAAGTGCGAGGCAGCAGGCGAGAACTCTGATGGTGGAGAT
AACGAGAGCCTTGAGAGCTCCAGCAATTCCAATGAGACCATCAACTGCAGCTCCGGCTCCTCTTCTCGGG
ACAGTCTAAGGGAGCCTCCGGCTACCGGCCTGTGCAAGCAGACTTACCAGCGGGAGACAAGGCATAGCTG
GGACTCGCCAGCTTTCAACAATGATGTGGTCCAGAGGCGGCACTACCGAATCGGCCTCAACCTCTTCAAC
AAGAAGCCAGAGAAGGGTATCCAGTATCTGATCGAGCGGGGCTTCCTGTCAGACACACCGGTGGGAGTGG
CTCACTTCATCCTGGAGCGGAAAGGCCTCAGCCGGCAGATGATAGGGGAATTCCTAGGGAACCGGCAGAA
GCAGTTCAACAGAGACGTGTTGGACTGTGTGGTGGATGAGATGGACTTCTCCTCCATGGATCTGGATGAT
GCGCTCCGGAAGTTCCAGTCCCATATCCGGGTTCAGGGTGAGGCCCAGAAAGTGGAGCGACTCATCGAAG
CCTTCAGCCAGCGGTACTGTGTCTGTAACCCAGCCCTCGTGCGCCAGTTCCGGAACCCAGACACCATCTT
CATCCTTGCTTTTGCCATCATCCTCCTCAATACCGACATGTACAGTCCCAGCGTCAAAGCTGAACGAAAG
ATGAAACTAGATGACTTCATCAAGAACCTGAGAGGGGTTGACAATGGTGAAGACATCCCCCGAGACCTCC
TGGTGGGCATCTACCAGCGCATCCAGGGGCGTGAACTGCGGACCAACGATGACCATGTGTCCCAGGTGCA
GGCTGTGGAGCGCATGATTGTTGGAAAGAAACCAGTCCTGTCTCTCCCTCACCGTCGACTGGTTTGCTGC
TGCCAGCTCTACGAGGTGCCAGATCCAAACCGCCCCCAGAGGCTAGGGTTGCATCAGCGGGAGGTCTTCC
TCTTCAATGATCTCCTTGTGGTCACCAAAATTTTCCAGAAGAAGAAGATCTTGGTGACGTACAGTTTCCG
TCAGTCTTTCCCCCTCGTGGAAATGCACATGCAGCTCTTCCAGAATTCATATTACCAGTTTGGGATCAAG
TTGCTGTCTGCAGTACCTGGTGGGGAGCGAAAAGTCCTCATCATCTTCAATGCCCCCAGCCTCCAGGACC
GGCTGCGCTTTACATCCGACCTGCGCGAGTCCATTGCGGAGGTGCAGGAGATGGAGAAATACCGTGTGGA
GTCGGAGCTGGAGAAGCAGAAAGGTATGATGCGGCCTAACGCCTCACAGCCTGGAGGGGCCAAGGACTCA
GTGAATGGGACGATGGCCCGCAGTAGCCTGGAGGACACTTACGGGGCAGGCGATGGGCTCAAACGGGGCG
CACTCAGCAGTTCCCTGCGAGACCTCTCTGATGCAGGGGTCTGTTATTAG

Translation (949 aa):
MEPPGRSSRSTASHTLHQYCCPTQVLDSMKLTPSGRLAESSVEGDAPGSDLSTAVDSPGSQPPYRLSQLP
PSSSHMGGPPAGVGLPWAQRARLQPASVALRKQEEEEIKRSKALSDSYELSTDLQDKKVEMLERKYGGSF
LSRRAARTIQTAFRQYRMNKNFERLRSSASESRMSRRIILSNMRMQFSFEEYEKAQNPAYFEGKPASLDE
GAMAGARSHRLERGLPYGGSCGGGIDGGGSSVTTSGEFSNDITELEDSFSKQVKSLAESIDEALNCHPSG
PMSEEPGSAQLEKRESKEQQEDSSATSFSDLPLYLDDTVPQQSPERLPSTEPPPQGRPEFWAPAPLPPVP
PPVPSGTREDGSREEGTRRGPGCLECRDFRLRAAHLPLLTIEPPSDSSVDLSDRSDRGSVHRQLVYEADG
CSPHGTLKHKGPPGRAPIPHRHYPAPEGPAPAPPGPLPPAPNSGTGPSGVAGGRRLGKCEAAGENSDGGD
NESLESSSNSNETINCSSGSSSRDSLREPPATGLCKQTYQRETRHSWDSPAFNNDVVQRRHYRIGLNLFN
KKPEKGIQYLIERGFLSDTPVGVAHFILERKGLSRQMIGEFLGNRQKQFNRDVLDCVVDEMDFSSMDLDD
ALRKFQSHIRVQGEAQKVERLIEAFSQRYCVCNPALVRQFRNPDTIFILAFAIILLNTDMYSPSVKAERK
MKLDDFIKNLRGVDNGEDIPRDLLVGIYQRIQGRELRTNDDHVSQVQAVERMIVGKKPVLSLPHRRLVCC
CQLYEVPDPNRPQRLGLHQREVFLFNDLLVVTKIFQKKKILVTYSFRQSFPLVEMHMQLFQNSYYQFGIK
LLSAVPGGERKVLIIFNAPSLQDRLRFTSDLRESIAEVQEMEKYRVESELEKQKGMMRPNASQPGGAKDS
VNGTMARSSLEDTYGAGDGLKRGALSSSLRDLSDAGVCY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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