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Report for CCDS10025.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10025.1 Public Homo sapiens 15 KLF13 24 110 108 CCDS HistoryNCBI Gene:51621Re-query CCDS DB by CCDS ID:10025.1Re-query CCDS DB by GeneID:51621See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10025.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000307145.4 ENSP00000302456.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000307145.4Link to Ensembl Protein Viewer:ENSP00000302456.3Re-query CCDS DB by Nucleotide ID:ENST00000307145Re-query CCDS DB by Protein ID:ENSP00000302456
Original member Current member NCBI NM_015995.4 NP_057079.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015995.4Link to Protein Sequence:NP_057079.2Re-query CCDS DB by Nucleotide ID:NM_015995Re-query CCDS DB by Protein ID:NP_057079Link to BLAST:NP_057079.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057079.2 288 Q9Y2Y9 288 100% 0 0

Chromosomal Locations for CCDS 10025.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 31327213 31327789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 31372010 31372299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (867 nt):
ATGGCAGCCGCCGCCTATGTGGACCACTTCGCCGCCGAGTGCCTCGTGTCCATGTCGAGCCGCGCGGTCG
TGCACGGGCCGCGGGAGGGGCCGGAGTCCCGGCCCGAGGGCGCGGCCGTGGCCGCCACCCCCACGCTGCC
CCGCGTCGAGGAGCGCCGCGACGGTAAGGACAGCGCCTCGCTCTTCGTGGTGGCGCGGATCCTAGCGGAC
CTCAACCAGCAAGCGCCGGCGCCCGCCCCGGCGGAGCGCAGGGAGGGCGCCGCGGCCCGGAAGGCGAGGA
CCCCCTGCCGCCTGCCGCCGCCCGCCCCCGAGCCCACCTCCCCCGGCGCCGAAGGCGCGGCGGCCGCGCC
CCCCAGCCCGGCGTGGAGCGAGCCGGAGCCCGAGGCGGGGCTGGAGCCCGAGCGGGAGCCGGGGCCCGCG
GGGAGCGGCGAGCCCGGCCTCAGACAAAGGGTCCGGCGGGGCCGAAGTCGCGCCGACCTCGAGTCCCCGC
AGAGGAAGCACAAGTGCCACTACGCGGGCTGCGAGAAAGTTTACGGGAAATCTTCGCACCTCAAGGCGCA
CCTGAGAACTCACACAGGTGAGAGGCCCTTCGCCTGCAGCTGGCAGGACTGCAACAAGAAGTTCGCGCGC
TCCGACGAGCTGGCGCGGCACTACCGCACACACACGGGCGAGAAGAAGTTCAGCTGCCCCATCTGCGAGA
AGCGCTTCATGCGCAGCGACCACCTGACCAAGCACGCGCGCCGCCACGCCAACTTCCACCCGGGAATGCT
GCAGCGGCGCGGCGGGGGCTCGCGGACCGGCTCCCTCAGCGACTACAGCCGCTCCGACGCCAGCAGCCCC
ACCATCAGCCCGGCCAGCTCGCCCTGA

Translation (288 aa):
MAAAAYVDHFAAECLVSMSSRAVVHGPREGPESRPEGAAVAATPTLPRVEERRDGKDSASLFVVARILAD
LNQQAPAPAPAERREGAAARKARTPCRLPPPAPEPTSPGAEGAAAAPPSPAWSEPEPEAGLEPEREPGPA
GSGEPGLRQRVRRGRSRADLESPQRKHKCHYAGCEKVYGKSSHLKAHLRTHTGERPFACSWQDCNKKFAR
SDELARHYRTHTGEKKFSCPICEKRFMRSDHLTKHARRHANFHPGMLQRRGGGSRTGSLSDYSRSDASSP
TISPASSP


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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