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Report for CCDS4906.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4906.1 Public Homo sapiens 6 MRPS18A 24 110 108 CCDS HistoryNCBI Gene:55168Re-query CCDS DB by CCDS ID:4906.1Re-query CCDS DB by GeneID:55168See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4906.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000372133.8 ENSP00000361206.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000372133.8Link to Ensembl Protein Viewer:ENSP00000361206.3Re-query CCDS DB by Nucleotide ID:ENST00000372133Re-query CCDS DB by Protein ID:ENSP00000361206
Original member Current member NCBI NM_018135.4 NP_060605.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018135.4Link to Protein Sequence:NP_060605.1Re-query CCDS DB by Nucleotide ID:NM_018135Re-query CCDS DB by Protein ID:NP_060605Link to BLAST:NP_060605.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060605.1 196 Q9NVS2-1 196 100% 0 0

Chromosomal Locations for CCDS 4906.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 43671762 43671906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43675202 43675271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43675494 43675617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43678518 43678625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43681089 43681120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43687668 43687779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (591 nt):
ATGGCGGCCCTCAAGGCTCTGGTGTCCGGCTGTGGGCGGCTTCTCCGTGGGCTACTAGCGGGCCCGGCAG
CGACCAGCTGGTCTCGGCTTCCAGCTCGCGGGTTCAGGGAAGTGGTGGAGACCCAAGAAGGGAAGACAAC
TATAATTGAAGGCCGTATCACAGCGACTCCCAAGGAGAGTCCAAATCCTCCTAACCCCTCTGGCCAGTGC
CCCATCTGCCGTTGGAACCTGAAGCACAAGTATAACTATGACGATGTTCTGCTGCTTAGCCAGTTCATCC
GGCCTCATGGAGGCATGCTGCCCCGAAAGATCACAGGCCTATGCCAGGAAGAACACCGCAAGATCGAGGA
GTGTGTGAAGATGGCCCACCGAGCAGGTCTATTACCAAATCACAGGCCTCGGCTTCCTGAAGGAGTTGTT
CCGAAGAGCAAACCCCAACTCAACCGGTACCTGACGCGCTGGGCTCCTGGCTCCGTCAAGCCCATCTACA
AAAAAGGCCCCCGCTGGAACAGGGTGCGCATGCCCGTGGGGTCACCCCTTCTGAGGGACAATGTCTGCTA
CTCAAGAACACCTTGGAAGCTGTATCACTGA

Translation (196 aa):
MAALKALVSGCGRLLRGLLAGPAATSWSRLPARGFREVVETQEGKTTIIEGRITATPKESPNPPNPSGQC
PICRWNLKHKYNYDDVLLLSQFIRPHGGMLPRKITGLCQEEHRKIEECVKMAHRAGLLPNHRPRLPEGVV
PKSKPQLNRYLTRWAPGSVKPIYKKGPRWNRVRMPVGSPLLRDNVCYSRTPWKLYH


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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