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Report for CCDS28298.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28298.1 Public Mus musculus 16 Krtap26-1 23 108 98 CCDS HistoryNCBI Gene:69533Re-query CCDS DB by CCDS ID:28298.1Re-query CCDS DB by GeneID:69533See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28298.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000095934.2 ENSMUSP00000093626.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000095934.2Link to Ensembl Protein Viewer:ENSMUSP00000093626.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000095934Re-query CCDS DB by Protein ID:ENSMUSP00000093626
Original member Current member NCBI NM_027105.3 NP_081381.1 Accepted alive Link to Nucleotide Sequence:NM_027105.3Link to Protein Sequence:NP_081381.1Re-query CCDS DB by Nucleotide ID:NM_027105Re-query CCDS DB by Protein ID:NP_081381Link to BLAST:NP_081381.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081381.1 215 Q9D7N2 215 100% 0 0

Chromosomal Locations for CCDS 28298.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 88647084 88647731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (648 nt):
ATGGCTAGCCGTAACAACTGCTCCTCCTCCGGCAACTGCAGCTCTGGATCGCTCAGAAATACCTGCCACA
TCCCAGCCAGCTCCTCCATTGCCCTCTGCTCTACAAACATGGGCTGTGGAGAGGTCTTCTGCGTCCCCAG
CAGCTGTCAAGATCACACCTGGTTCATGGACAACTGCCCAGAGACCTTTGCAGAACCTCTCAGTGGGCAG
CCACCCAGCCGTGAAGCCAGCGGCTTTGAAAACTCTTGTTGCTCTTCGACATACTGTGTGCCCAGACACT
GCCAAGGATCTGGCTATATTCCTGCGTCTTCCTTCATCTCTGGCTCTTGCCTCCCAGCATCCTACAGGCC
TGTGAGCTATGTATCTAGCAGTTGCCGGCCAGTGAGTCCTTTCATGAACAACTGCCGTCCTGTAAGCTGT
GTATCTGGTGGATACCGCCCACTCCCTTGTGGATCCAATAGCTGCCGACCTCTGGGCATTGTCACTTATG
GATGCAGGCCTTCAGGTTGTGTGACCTATGGCCCTCAGACCATTCACATTGTGTCAAACAGCCTGAGACC
TCTGCAGCCTGTCTGCGGTGGTTGCCAACCATCGATCCCTGTGTTTGGCACTTGTCGTCCTTCTTGCTCT
GCACAAGGAGGTCAGTAG

Translation (215 aa):
MASRNNCSSSGNCSSGSLRNTCHIPASSSIALCSTNMGCGEVFCVPSSCQDHTWFMDNCPETFAEPLSGQ
PPSREASGFENSCCSSTYCVPRHCQGSGYIPASSFISGSCLPASYRPVSYVSSSCRPVSPFMNNCRPVSC
VSGGYRPLPCGSNSCRPLGIVTYGCRPSGCVTYGPQTIHIVSNSLRPLQPVCGGCQPSIPVFGTCRPSCS
AQGGQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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