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Report for CCDS28125.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28125.1 Public Mus musculus 16 Fyttd1 23 108 98 CCDS HistoryNCBI Gene:69823Re-query CCDS DB by CCDS ID:28125.1Re-query CCDS DB by GeneID:69823See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28125.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023489.10 ENSMUSP00000023489.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023489.10Link to Ensembl Protein Viewer:ENSMUSP00000023489.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000023489Re-query CCDS DB by Protein ID:ENSMUSP00000023489
Original member Current member NCBI NM_027226.4 NP_081502.2 Accepted alive Link to Nucleotide Sequence:NM_027226.4Link to Protein Sequence:NP_081502.2Re-query CCDS DB by Nucleotide ID:NM_027226Re-query CCDS DB by Protein ID:NP_081502Link to BLAST:NP_081502.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081502.2 317 Q91Z49-1 317 100% 0 0

Chromosomal Locations for CCDS 28125.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 32877894 32877996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32884124 32884252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32891265 32891413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32895085 32895197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32898374 32898470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32898878 32898939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32900633 32900707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32902419 32902545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32905532 32905630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (954 nt):
ATGAACCGGTTTGGCACCCGGTTGGTAGGAGCCACGGCGACCCCGCCGCCGCCACCGAAAGCACGAAGCA
ATGAGAACCTGGACAAAATCGATATGTCCCTGGATGATATTATCAAACTGAATAGAAAGGAGGGAAAGAA
GCAAAACTTTCCAAGACTAAATAGAAGACTCCAGCAAAGTGGTACCCGGCAATTCAGGATGAGAGTACGG
TGGGGAATCCAGCAGAATTCTGGTTTTGGTAAAACTAGTTTGAGCCGTAGAGGAAGAGTATTGCCTGGAA
AAAGACGTCCTTATGGAGTTATCACCGGCCTTGCAGCCAGGAAAGCAACTGGGATTCGAAAAGGAATAAG
TCCTATGAATCGTCCACCTCTAAGTGACAAGAATATAGAACGATATTTTCCAGCATTGAAAAGGAAGACA
AGCCTTCTGAGACAGAATGAAGTACAAAGGAAACAAGTTGCTGTTCTCAAAAGACCTAATCAGTTAAACA
GAAAAAATAACATTCCAGCTAATTTTACCAGGAATGGAAATAAATTAAGTCATCAGAAAGACACTCGTCA
GGCAACCTTTCTTTTCCGAAGAGGCCTGAAGGTTCAGACCCAGTTGAACACAGAACAACTGATAGATGAT
GTGGTAGCAAAGAGAACGCGTCAATGGCGTACTTCCACCACAAATGGAGGAATTTTGACTGTATCCATTG
ACAATCCTGGAGCTGTACAGTGTCCGGTAACTCAGAAACCACGATTAACTCGTACTGCTGTGCCCTCATT
CTTGACAAAAAGAGAACAGTCTGATGTTAAGAAAGTTCCTAAAGGCGTCCCTCTACAGTTTGACATAAAT
AGTGTGGGAAAACAGACAGGGATGACTTTGAATGAACGATTTGGGATACTGAAAGAGCAAAGAGCCAACC
TCACGTTCAGCAAAGGAGGAAGCCGCTTTGTGACTGTGGGATAG

Translation (317 aa):
MNRFGTRLVGATATPPPPPKARSNENLDKIDMSLDDIIKLNRKEGKKQNFPRLNRRLQQSGTRQFRMRVR
WGIQQNSGFGKTSLSRRGRVLPGKRRPYGVITGLAARKATGIRKGISPMNRPPLSDKNIERYFPALKRKT
SLLRQNEVQRKQVAVLKRPNQLNRKNNIPANFTRNGNKLSHQKDTRQATFLFRRGLKVQTQLNTEQLIDD
VVAKRTRQWRTSTTNGGILTVSIDNPGAVQCPVTQKPRLTRTAVPSFLTKREQSDVKKVPKGVPLQFDIN
SVGKQTGMTLNERFGILKEQRANLTFSKGGSRFVTVG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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