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Report for CCDS20156.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20156.1 Public Mus musculus 6 Scrn1 23 108 98 CCDS HistoryNCBI Gene:69938Re-query CCDS DB by CCDS ID:20156.1Re-query CCDS DB by GeneID:69938See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20156.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000019268.10 ENSMUSP00000019268.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000019268.10Link to Ensembl Protein Viewer:ENSMUSP00000019268.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000019268Re-query CCDS DB by Protein ID:ENSMUSP00000019268
Original member NCBI NM_027268.2 NP_081544.1 Updated not alive Link to Nucleotide Sequence:NM_027268.2Link to Protein Sequence:NP_081544.1Re-query CCDS DB by Nucleotide ID:NM_027268Re-query CCDS DB by Protein ID:NP_081544
Current member NCBI NM_027268.3 NP_081544.1 Accepted alive Link to Nucleotide Sequence:NM_027268.3Link to Protein Sequence:NP_081544.1Re-query CCDS DB by Nucleotide ID:NM_027268Re-query CCDS DB by Protein ID:NP_081544Link to BLAST:NP_081544.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081544.1 414 Q9CZC8 414 100% 0 0

Chromosomal Locations for CCDS 20156.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 54509204 54509362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 54512049 54512229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 54520700 54520865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 54522760 54522954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 54525509 54525711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 54534413 54534594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 54548224 54548382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1245 nt):
ATGTCTGGCGCGCCTCCAAGTTACTCTTTTGTGGCTCTGCCACCTCGAGCTAAGGACGGTCTGGTGGTAT
TTGGGAAAAATTCAGCTCGGCCCAGAGATGAAGTCCAGGAGGTTGTGTATTTCCCAGCTGTTGACCATGA
CGCTGAGAGCAAAGTTGAGTGCACTTACATCTCAATCGACCAAGTCCCCAGGACCCACGCCATCGTGATA
AGCAGACCTGCCTGGCTCTGGGGGGCAGAAATGGGAGCCAATGAACATGGGGTATGCATAGCCAACGAAG
CCATCAATGCCAGAGAACCAGCTGCTGAGACGGAAGCCTTACTGGGAATGGATCTGGTCAGGCTTGGCTT
AGAACGAGGGACAACAGCTAAAGAAGCCCTAGACATCATTGTTTCTTTATTGGATGAGCACGGACAAGGT
GGAAATTATTATGAAGATGCCCACTCCTGCCATAGCTTCCAAAGTGCATATCTGCTGGTGGACCGAGATG
AAGCCTGGGTGCTGGAGACTGTAGGGAAGTATTGGGCTGCTGAGAGAATCACAGAGGGAGTGAGGTGCAT
TTGCAACCATCTTTCCCTCGCGACTAAGCTGGATGAAGAGCACCCAGAACTCAGGACTTATGCTCAGAGT
CAAGGCTGGTGGACGGGAGACGACGAATTCAACTTTGCCCAGGTTTTTTCTCCAGCCGATGACCGTTTGG
ACTGCTGTGCAGGCCAAGACAGCTTAGAAAAGCAAGAAGAAAGCATCACTGTGCAGACGATGATTAACAT
CTTACGAGACAAAGCCAGTGGTGTTTGCATAGATTCTGAGTCTTTCCTCACCACAGCCAGTATAGTGTCT
GTCTTGCCTCAGAACAGAAGTTCACCGTGTATCCACTACTTCACCGGGACCCCAGATCCTTCCAGGTCCA
TATTCAAGCCTTTCATCTTTGTTGATGATGTAAAACTTGTCCCCAAAGCACAGTCACCCTGTTTTGGTGA
CGATGACCCAGCCAAAAAGGAACCTCGGTTCCAGGAGAAGCCAGACCGCCGACATGAGCTGTACAAGGCA
CACGAGTGGGCACGTGCTGTCATCGAGAGTGACGAGGAGCAAGGTCGCACCCTGAGGAAGACCATGCTGG
AGTTGGAGAAGCAAGGCCTGGAGGCCATGGACGAGATTCTGAGCAGCCCCGAGCCCCCGGACCCCGCCGA
GGTGGGGGACCTATTCTATGACTGTGTGGACACCGAGATGAAGTTCTTTAAGTGA

Translation (414 aa):
MSGAPPSYSFVALPPRAKDGLVVFGKNSARPRDEVQEVVYFPAVDHDAESKVECTYISIDQVPRTHAIVI
SRPAWLWGAEMGANEHGVCIANEAINAREPAAETEALLGMDLVRLGLERGTTAKEALDIIVSLLDEHGQG
GNYYEDAHSCHSFQSAYLLVDRDEAWVLETVGKYWAAERITEGVRCICNHLSLATKLDEEHPELRTYAQS
QGWWTGDDEFNFAQVFSPADDRLDCCAGQDSLEKQEESITVQTMINILRDKASGVCIDSESFLTTASIVS
VLPQNRSSPCIHYFTGTPDPSRSIFKPFIFVDDVKLVPKAQSPCFGDDDPAKKEPRFQEKPDRRHELYKA
HEWARAVIESDEEQGRTLRKTMLELEKQGLEAMDEILSSPEPPDPAEVGDLFYDCVDTEMKFFK


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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