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Report for CCDS22655.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22655.1 Public Mus musculus 8 Ist1 23 108 98 CCDS HistoryNCBI Gene:71955Re-query CCDS DB by CCDS ID:22655.1Re-query CCDS DB by GeneID:71955See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22655.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034164.5 ENSMUSP00000034164.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034164.5Link to Ensembl Protein Viewer:ENSMUSP00000034164.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000034164Re-query CCDS DB by Protein ID:ENSMUSP00000034164
Original member Current member NCBI NM_028018.2 NP_082294.1 Accepted alive Link to Nucleotide Sequence:NM_028018.2Link to Protein Sequence:NP_082294.1Re-query CCDS DB by Nucleotide ID:NM_028018Re-query CCDS DB by Protein ID:NP_082294Link to BLAST:NP_082294.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082294.1 362 Q9CX00 362 100% 0 0

Chromosomal Locations for CCDS 22655.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 109672448 109672641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 109675376 109675424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 109676758 109676850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 109677486 109677686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 109678855 109678965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 109679424 109679507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 109682107 109682194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 109682598 109682778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 109683676 109683763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1089 nt):
ATGCTGGGCTCTGGGTTCAAAGCTGAGCGCTTACGAGTCAATTTGAGATTAGTTATAAATCGTCTCAAAC
TGTTGGAGAAAAAAAAAACGGAACTGGCTCAGAAGGCAAGGAAGGAGATTGCTGACTACCTGGCCGCCGG
AAAGGATGAGCGAGCACGCATCCGTGTGGAGCACATAATCCGGGAGGACTACCTCGTGGAGGCCATGGAG
ATCCTGGAGCTGTATTGTGACCTGCTGCTGGCGCGCTTTGGCCTTATCCAGTCTATGAAGGAGCTAGATT
CTGGTCTAGCTGAATCCGTGTCTACACTGATCTGGGCTGCGCCTCGGCTTCAGTCAGAAGTGGCTGAGTT
GAAAATAGTTGCCGATCAGCTCTGTGCCAAATACAGCAAGGAATATGGCAAGTTGTGCAGGACCAACCAG
ATCGGGACTGTGAATGATAGGCTAATGCACAAACTGAGCGTAGAAGCCCCACCCAAAATCCTAGTGGAGA
GATACCTGATTGAAATTGCCAAGAATTACAATGTACCCTACGAACCTGACTCTGTGGTCATGGCAGAAGC
TCCTGTTGGGGTGGAGACAGATCTTATTGATGTTGGATTTACGGACGATGTGAAGAAAGGTGGTCCTGGA
AGAGGAGGAGGGGGCGGGTTCACAGCCCCCGTTGGGGGACCTGATGGGATTGTGCCCATGCCCATGCCTA
TGCCCATGCCATCTCCAAATGCTCCCTTCGCATACCCACTGCCAAAGGGACCATCGGATTTCAGTGGATT
GCCAGTGGGGACTTACCAGGCCTTTCCTAACATTCACCCACCTCAGATACCAGCAACTCCCCCATCCTAT
GAATCTGTTGATGACATTAATGGTGATAAAACTGTTTCTTCTGCACAGATTGTTGGACCCAAGCCAGAAG
CTCCTGCAAAGCCCCCTTCCAGACCTGTGGATAATTACAACACCTTTGTACTGCCAGAGTTGCCATCGGT
GCCAGACACACTTCCAACTGCATCTGCTGGAGCCAGCACCTCAGCATCAGAAGACATAGACTTTGATGAT
CTTTCCCGGAGATTTGAGGAACTGAAAAAGAAAACATAG

Translation (362 aa):
MLGSGFKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHIIREDYLVEAME
ILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIVADQLCAKYSKEYGKLCRTNQ
IGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEPDSVVMAEAPVGVETDLIDVGFTDDVKKGGPG
RGGGGGFTAPVGGPDGIVPMPMPMPMPSPNAPFAYPLPKGPSDFSGLPVGTYQAFPNIHPPQIPATPPSY
ESVDDINGDKTVSSAQIVGPKPEAPAKPPSRPVDNYNTFVLPELPSVPDTLPTASAGASTSASEDIDFDD
LSRRFEELKKKT


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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