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Report for CCDS12798.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
12798.1 |
Public |
Homo sapiens |
19 |
SYT3 |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:84258](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:12798.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:84258](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 19 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 12798.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000338916.8 |
ENSP00000340914.3 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000338916.8](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000340914.3](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000338916](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000340914](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000593901.5 |
ENSP00000468982.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000593901.5](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000468982.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000593901](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000468982](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000600079.6 |
ENSP00000469398.1 |
MANE Select |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000600079.6](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000469398.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000600079](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000469398](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001160328.2 |
NP_001153800.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001160328.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001153800.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001160328](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001153800](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001153800.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001160329.2 |
NP_001153801.1 |
MANE Select |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001160329.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001153801.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001160329](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001153801](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001153801.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_032298.3 |
NP_115674.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_032298.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_115674.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_032298](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_115674](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_115674.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 12798.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (1773 nt): ATGTCAGGAGACTACGAGGATGACCTCTGCCGGCGGGCACTCATCCTGGTCTCGGACCTCTGTGCGCGGG TCCGAGATGCTGACACCAACGACAGGTGCCAGGAGTTCAATGACCGAATCCGAGGCTATCCCCGGGGTCC AGATGCAGACATCTCCGTGAGCCTGCTGTCGGTCATCGTGACATTCTGTGGCATTGTCCTTCTGGGTGTC TCTCTCTTCGTGTCCTGGAAGTTGTGCTGGGTGCCCTGGCGGGACAAGGGAGGCTCGGCAGTGGGCGGTG GCCCCCTGCGCAAAGACCTAGGCCCTGGTGTCGGGCTGGCAGGCCTGGTAGGCGGAGGCGGGCACCACCT GGCGGCTGGCCTGGGTGGCCATCCTCTGCTGGGCGGCCCACACCACCATGCCCATGCCGCCCACCATCCA CCCTTTGCTGAGCTGCTGGAGCCAGGCAGCCTGGGGGGTTCTGACACCCCTGAGCCCTCCTACTTGGACA TGGACTCGTATCCAGAGGCTGCAGCAGCAGCAGTGGCCGCTGGGGTCAAACCGAGCCAAACATCCCCTGA GCTGCCCTCTGAGGGGGGAGCAGGCTCTGGGTTGCTCCTGCTGCCCCCCAGTGGTGGGGGCTTGCCCAGT GCCCAGTCACATCAGCAGGTCACAAGCCTGGCACCCACTACCAGGTACCCAGCCCTGCCCCGACCCCTCA CCCAGCAGACTCTGACCTCCCAGCCGGACCCCAGCAGTGAGGAGCGGCCACCTGCCCTGCCCTTACCCCT GCCTGGAGGCGAGGAAAAAGCCAAACTCATTGGGCAGATTAAGCCAGAGCTGTACCAGGGGACTGGCCCT GGTGGCCGGCGGAGCGGTGGGGGCCCAGGCTCTGGAGAGGCAGGCACAGGGGCACCCTGTGGCCGTATCA GCTTCGCCCTGCGGTACCTCTATGGCTCGGACCAGCTGGTGGTGAGGATCCTGCAGGCCCTGGACCTCCC TGCCAAGGACTCCAACGGCTTCTCAGACCCCTACGTCAAGATCTACCTGCTGCCTGACCGCAAGAAAAAG TTTCAGACCAAGGTGCACAGGAAGACCCTGAACCCCGTCTTCAATGAGACGTTTCAATTCTCGGTGCCCC TGGCCGAGCTGGCCCAACGCAAACTGCACTTCAGCGTCTATGACTTTGACCGCTTCTCGCGGCACGACCT CATCGGCCAGGTGGTGCTGGACAACCTCCTGGAGCTGGCCGAGCAGCCCCCTGACCGCCCGCTCTGGAGG GACATCGTGGAGGGCGGCTCGGAAAAAGCAGATCTTGGGGAGCTCAACTTCTCACTCTGCTACCTCCCCA CGGCCGGGCGCCTCACCGTGACCATCATCAAAGCCTCTAACCTCAAAGCGATGGACCTCACTGGCTTCTC AGACCCCTACGTGAAGGCCTCCCTGATCAGCGAGGGGCGGCGTCTGAAGAAGCGGAAAACCTCCATCAAG AAGAACACGCTGAACCCCACCTATAATGAGGCGCTGGTGTTCGACGTGGCCCCCGAGAGCGTGGAGAACG TGGGGCTCAGCATCGCCGTGGTAGACTACGACTGCATCGGGCACAACGAGGTGATCGGCGTGTGCCGTGT GGGCCCCGACGCTGCCGACCCGCACGGCCGCGAGCACTGGGCAGAGATGCTGGCCAATCCCCGCAAGCCC GTGGAGCACTGGCATCAGCTAGTGGAGGAAAAGACTGTGACCAGCTTCACAAAAGGCAGCAAAGGACTAT CAGAGAAAGAGAACTCCGAGTGA
Translation (590 aa): MSGDYEDDLCRRALILVSDLCARVRDADTNDRCQEFNDRIRGYPRGPDADISVSLLSVIVTFCGIVLLGV SLFVSWKLCWVPWRDKGGSAVGGGPLRKDLGPGVGLAGLVGGGGHHLAAGLGGHPLLGGPHHHAHAAHHP PFAELLEPGSLGGSDTPEPSYLDMDSYPEAAAAAVAAGVKPSQTSPELPSEGGAGSGLLLLPPSGGGLPS AQSHQQVTSLAPTTRYPALPRPLTQQTLTSQPDPSSEERPPALPLPLPGGEEKAKLIGQIKPELYQGTGP GGRRSGGGPGSGEAGTGAPCGRISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKK FQTKVHRKTLNPVFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWR DIVEGGSEKADLGELNFSLCYLPTAGRLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIK KNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPDAADPHGREHWAEMLANPRKP VEHWHQLVEEKTVTSFTKGSKGLSEKENSE
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