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Report for CCDS7847.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7847.1 Public Homo sapiens 11 MRGPRX2 24 110 108 CCDS HistoryNCBI Gene:117194Re-query CCDS DB by CCDS ID:7847.1Re-query CCDS DB by GeneID:117194See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7847.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000329773.3 ENSP00000333800.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000329773.3Link to Ensembl Protein Viewer:ENSP00000333800.2Re-query CCDS DB by Nucleotide ID:ENST00000329773Re-query CCDS DB by Protein ID:ENSP00000333800
Original member Current member NCBI NM_001303615.2 NP_001290544.1 Accepted alive Link to Nucleotide Sequence:NM_001303615.2Link to Protein Sequence:NP_001290544.1Re-query CCDS DB by Nucleotide ID:NM_001303615Re-query CCDS DB by Protein ID:NP_001290544Link to BLAST:NP_001290544.1
Original member Current member NCBI NM_054030.4 NP_473371.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_054030.4Link to Protein Sequence:NP_473371.1Re-query CCDS DB by Nucleotide ID:NM_054030Re-query CCDS DB by Protein ID:NP_473371Link to BLAST:NP_473371.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001290544.1 330 Q96LB1 330 100% 0 0
NP_473371.1 330 Q96LB1 330 100% 0 0

Chromosomal Locations for CCDS 7847.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 19055410 19056402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (993 nt):
ATGGATCCAACCACCCCGGCCTGGGGAACAGAAAGTACAACAGTGAATGGAAATGACCAAGCCCTTCTTC
TGCTTTGTGGCAAGGAGACCCTGATCCCGGTCTTCCTGATCCTTTTCATTGCCCTGGTCGGGCTGGTAGG
AAACGGGTTTGTGCTCTGGCTCCTGGGCTTCCGCATGCGCAGGAACGCCTTCTCTGTCTACGTCCTCAGC
CTGGCCGGGGCCGACTTCCTCTTCCTCTGCTTCCAGATTATAAATTGCCTGGTGTACCTCAGTAACTTCT
TCTGTTCCATCTCCATCAATTTCCCTAGCTTCTTCACCACTGTGATGACCTGTGCCTACCTTGCAGGCCT
GAGCATGCTGAGCACCGTCAGCACCGAGCGCTGCCTGTCCGTCCTGTGGCCCATCTGGTATCGCTGCCGC
CGCCCCAGACACCTGTCAGCGGTCGTGTGTGTCCTGCTCTGGGCCCTGTCCCTACTGCTGAGCATCTTGG
AAGGGAAGTTCTGTGGCTTCTTATTTAGTGATGGTGACTCTGGTTGGTGTCAGACATTTGATTTCATCAC
TGCAGCGTGGCTGATTTTTTTATTCATGGTTCTCTGTGGGTCCAGTCTGGCCCTGCTGGTCAGGATCCTC
TGTGGCTCCAGGGGTCTGCCACTGACCAGGCTGTACCTGACCATCCTGCTCACAGTGCTGGTGTTCCTCC
TCTGCGGCCTGCCCTTTGGCATTCAGTGGTTCCTAATATTATGGATCTGGAAGGATTCTGATGTCTTATT
TTGTCATATTCATCCAGTTTCAGTTGTCCTGTCATCTCTTAACAGCAGTGCCAACCCCATCATTTACTTC
TTCGTGGGCTCTTTTAGGAAGCAGTGGCGGCTGCAGCAGCCGATCCTCAAGCTGGCTCTCCAGAGGGCTC
TGCAGGACATTGCTGAGGTGGATCACAGTGAAGGATGCTTCCGTCAGGGCACCCCGGAGATGTCGAGAAG
CAGTCTGGTGTAG

Translation (330 aa):
MDPTTPAWGTESTTVNGNDQALLLLCGKETLIPVFLILFIALVGLVGNGFVLWLLGFRMRRNAFSVYVLS
LAGADFLFLCFQIINCLVYLSNFFCSISINFPSFFTTVMTCAYLAGLSMLSTVSTERCLSVLWPIWYRCR
RPRHLSAVVCVLLWALSLLLSILEGKFCGFLFSDGDSGWCQTFDFITAAWLIFLFMVLCGSSLALLVRIL
CGSRGLPLTRLYLTILLTVLVFLLCGLPFGIQWFLILWIWKDSDVLFCHIHPVSVVLSSLNSSANPIIYF
FVGSFRKQWRLQQPILKLALQRALQDIAEVDHSEGCFRQGTPEMSRSSLV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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