NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS8464.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8464.1 Public Homo sapiens 11 PATE1 24 110 108 CCDS HistoryNCBI Gene:160065Re-query CCDS DB by CCDS ID:8464.1Re-query CCDS DB by GeneID:160065See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8464.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000305738.10 ENSP00000307164.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000305738.10Link to Ensembl Protein Viewer:ENSP00000307164.4Re-query CCDS DB by Nucleotide ID:ENST00000305738Re-query CCDS DB by Protein ID:ENSP00000307164
Original member Current member NCBI NM_138294.3 NP_612151.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_138294.3Link to Protein Sequence:NP_612151.1Re-query CCDS DB by Nucleotide ID:NM_138294Re-query CCDS DB by Protein ID:NP_612151Link to BLAST:NP_612151.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_612151.1 126 Q8WXA2-1 126 100% 0 0

Chromosomal Locations for CCDS 8464.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 125746305 125746356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 125746661 125746696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 125747376 125747411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 125747700 125747822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 125748600 125748733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (381 nt):
ATGGACAAGTCCCTCTTGCTGGAACTCCCCATCCTGCTCTGCTGCTTTAGGGCATTATCTGGATCACTTT
CAATGAGAAATGATGCAGTCAATGAAATAGTTGCTGTGAAAAACAATTTTCCTGTGATAGAAATTGTTCA
GTGTAGGATGTGCCACCTCCAGTTCCCAGGAGAAAAGTGCTCCAGAGGAAGAGGAATATGCACAGCAACA
ACAGAAGAGGCCTGCATGGTTGGAAGGATGTTCAAAAGGGATGGTAATCCCTGGTTAACCTTCATGGGCT
GCCTAAAGAACTGTGCTGATGTGAAAGGCATAAGGTGGAGTGTCTATTTGGTGAACTTCAGGTGCTGCAG
GAGCCATGACCTGTGCAATGAAGACCTTTAG

Translation (126 aa):
MDKSLLLELPILLCCFRALSGSLSMRNDAVNEIVAVKNNFPVIEIVQCRMCHLQFPGEKCSRGRGICTAT
TEEACMVGRMFKRDGNPWLTFMGCLKNCADVKGIRWSVYLVNFRCCRSHDLCNEDL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH