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Report for CCDS27938.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27938.1 Public Mus musculus 16 Mettl22 23 108 98 CCDS HistoryNCBI Gene:239706Re-query CCDS DB by CCDS ID:27938.1Re-query CCDS DB by GeneID:239706See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27938.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000046470.15 ENSMUSP00000044108.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000046470.15Link to Ensembl Protein Viewer:ENSMUSP00000044108.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000046470Re-query CCDS DB by Protein ID:ENSMUSP00000044108
Original member NCBI NM_146247.1 NP_666359.1 Updated not alive Link to Nucleotide Sequence:NM_146247.1Link to Protein Sequence:NP_666359.1Re-query CCDS DB by Nucleotide ID:NM_146247Re-query CCDS DB by Protein ID:NP_666359
Current member NCBI NM_146247.2 NP_666359.1 Accepted alive Link to Nucleotide Sequence:NM_146247.2Link to Protein Sequence:NP_666359.1Re-query CCDS DB by Nucleotide ID:NM_146247Re-query CCDS DB by Protein ID:NP_666359Link to BLAST:NP_666359.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666359.1 393 Q8R1C6 393 100% 0 0

Chromosomal Locations for CCDS 27938.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 8473849 8473966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 8477967 8478329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 8482127 8482167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 8482256 8482400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 8484262 8484333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 8484820 8484873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 8485865 8485945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 8487359 8487461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 8488659 8488827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 8490102 8490137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1182 nt):
ATGGGCCCAGCCATGGACGAGGTCACCTTCAAAAGTGACACTGTGCTGTCAGATGTCCACCTGTACACCC
CCAACCAGAGGCACCTCATGGTGCGGCTGAATGGCATGGGGCAGCCAGTCTTCCTGTCCCAGTTCAAGCT
CTTGTGGAGTCGGGACTCTTGGACAGACTCGGGGGCTGAGGACAGTGGTCCCACAGACGTCTCCACAGAG
GAGATGCCCCCTGCTGGGTCAGGAAGTGGCCACAGTCATGAGGATTTGTCCCTCCAGGCTGGGGATGACA
ACACCATCCAGGAAGGGTTGAGTGTTCCCCTGGACGAGGATGGGGACCTGGATGTGGTACGAAGGCCACG
GGCTGCTTCTGATCCCAACCCGGCAGAGCCCGCAAGAGACAAGGTACACCCCACGATTCTAGCACAGGAG
GAAGATGACCTCGTGGGAGACCAGGAGTACGAGAGCTGCCCCCACAGCATCATCAAAATAGAGCACACCA
TGGCCACGCCCCTGGAGGATGTAGGCAAGCAGGTGTGGCGGGGTGCCCTACTCCTGGCAGACTATATCCT
GTTCCGAAGAGACCTCTTCCAGGGATGCACCGTGCTGGAGCTTGGGGCAGGCACAGGGCTTGCCAGCATC
GTGGCAGCCACGATGGCACACACCGTTTATTGTACAGATGTCGGCACAGACCTCCTGGCCATGTGCCAAC
GAAACGTTGCCCTCAACAGCCACCTGACTGCCACTGGAGGTGGCGTGGTTAAGGTCAAGGAGCTGGACTG
GCTGAAGGACAACCTCTGCACAGATCCCAAAGCCCCCTTCAGCTGGTCAGAAGAAGAAATCGCTGACCTG
TATGACCACACCACTGTGCTGCTTGCAGCCGAAGTGTTCTACGATGATGACTTAACCAACGCTCTGTTTA
ACACACTTTCCCGACTGGTCCACAGACTGAAAAATGCCTGCACCGCCATCTTCTCAGTGGAAAAAAGGTT
CAACTTCACACTGAGACACTTGGACGTCACGTGTGAAGCCTACGATCACTTCCGTGCCTCCCTGGACTCA
TTGGAGAAGCTGGCCGATGGCAGGCTGCGCTTCATGGTGGAGCCTGTGGAGGCCTCCTTCCCGCAGCTGC
TCGTCTATGAACGCATCCGGCAGCTGGAGCTCTGGAAGATAGTTGTGGAACCAGCAGCGTGA

Translation (393 aa):
MGPAMDEVTFKSDTVLSDVHLYTPNQRHLMVRLNGMGQPVFLSQFKLLWSRDSWTDSGAEDSGPTDVSTE
EMPPAGSGSGHSHEDLSLQAGDDNTIQEGLSVPLDEDGDLDVVRRPRAASDPNPAEPARDKVHPTILAQE
EDDLVGDQEYESCPHSIIKIEHTMATPLEDVGKQVWRGALLLADYILFRRDLFQGCTVLELGAGTGLASI
VAATMAHTVYCTDVGTDLLAMCQRNVALNSHLTATGGGVVKVKELDWLKDNLCTDPKAPFSWSEEEIADL
YDHTTVLLAAEVFYDDDLTNALFNTLSRLVHRLKNACTAIFSVEKRFNFTLRHLDVTCEAYDHFRASLDS
LEKLADGRLRFMVEPVEASFPQLLVYERIRQLELWKIVVEPAA


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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