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Report for CCDS2836.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2836.1 Public Homo sapiens 3 IQCF1 24 110 108 CCDS HistoryNCBI Gene:132141Re-query CCDS DB by CCDS ID:2836.1Re-query CCDS DB by GeneID:132141See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2836.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000310914.10 ENSP00000307958.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000310914.10Link to Ensembl Protein Viewer:ENSP00000307958.5Re-query CCDS DB by Nucleotide ID:ENST00000310914Re-query CCDS DB by Protein ID:ENSP00000307958
Original member Current member NCBI NM_152397.3 NP_689610.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152397.3Link to Protein Sequence:NP_689610.2Re-query CCDS DB by Nucleotide ID:NM_152397Re-query CCDS DB by Protein ID:NP_689610Link to BLAST:NP_689610.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689610.2 205 Q8N6M8-1 205 100% 0 0

Chromosomal Locations for CCDS 2836.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 51894890 51895336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51896832 51896894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51902985 51903089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51903270 51903272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (618 nt):
ATGGAGGAGAAGCAGCCCCAAAAGACGAAGGAACCCTCAAAAGAAGATGAGCCTCAGCAGAAGGAGATGC
CAACCCATTTGTCCTTAGGAGCAGAGTCAAAGGCAGAGGCTAAAACTCCAGTTCTGGTTGAGACACAGAC
AGTGGACAATGCCAATGAGAAATCAGAAAAACCCCCAGAAAACCAAAAGAAGCTCTCTGACAAAGATACG
GTAGCCACCAAGATCCAGGCCTGGTGGCGGGGCACCCTGGTGCGTCGGGCACTGTTGCACGCAGCCCTCA
GTGCCTGCATCATTCAGTGCTGGTGGCGGCTGATACTGTCCAAGATTCTGAAGAAGAGGCGGCAGGCAGC
GCTAGAGGCCTTCTCCCGGAAGGAGTGGGCAGCAGTCACACTGCAGTCCCAGGCCCGCATGTGGCGCATC
CGCAGACGCTATTGCCAGGTGCTCAATGCTGTTCGCATCATCCAGGCTTACTGGAGGTGCCGCTCCTGTG
CTTCCCGGGGGTTCATCAAGGGCCAGTACAGAGTCACAGCCAACCAGCTGCATCTCCAGCTGGAGATCTT
GCTGGACTCAGGGCCTTGCATTGTGACAGAGTGTATTCCCTTCTCAATAAAGGAATGA

Translation (205 aa):
MEEKQPQKTKEPSKEDEPQQKEMPTHLSLGAESKAEAKTPVLVETQTVDNANEKSEKPPENQKKLSDKDT
VATKIQAWWRGTLVRRALLHAALSACIIQCWWRLILSKILKKRRQAALEAFSRKEWAAVTLQSQARMWRI
RRRYCQVLNAVRIIQAYWRCRSCASRGFIKGQYRVTANQLHLQLEILLDSGPCIVTECIPFSIKE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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