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Report for CCDS37888.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37888.1 Public Mus musculus 19 Peli3 23 108 98 CCDS HistoryNCBI Gene:240518Re-query CCDS DB by CCDS ID:37888.1Re-query CCDS DB by GeneID:240518See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37888.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025834.14 ENSMUSP00000025834.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025834.14Link to Ensembl Protein Viewer:ENSMUSP00000025834.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000025834Re-query CCDS DB by Protein ID:ENSMUSP00000025834
Original member Current member NCBI NM_172835.3 NP_766423.3 Accepted alive Link to Nucleotide Sequence:NM_172835.3Link to Protein Sequence:NP_766423.3Re-query CCDS DB by Nucleotide ID:NM_172835Re-query CCDS DB by Protein ID:NP_766423Link to BLAST:NP_766423.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766423.3 445 Q8BXR6 445 99.7753% 0 1

Chromosomal Locations for CCDS 37888.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 4932298 4932867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4934367 4934555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4934903 4935097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4936118 4936219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4938049 4938178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4941760 4941911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1338 nt):
ATGGTGCTGGAAGGAAACCCTGACGTGGGATCCCCCCGGACCTCAGACCTCCAGCACCCGGGGAGCCAGG
GCTCTTGCATCCTGTCTTGTCCTGGTGAAGAAGCACTGGCAGGCGAGGAGCCCATCAAGTATGGTGAACT
CATCGTTCTGGGCTACAATGGGTGTCTGGCAAGTGGAGACAAGGGCCGCCGCCGAAGCCGCCTGGCACTG
AGCCGCCGGCCACATGCCAACGGAGTGAAGCCAGATGTCATGCACCACATCTCCACACCACTCGTCTCCA
AGGCCCTGAGTAACCGAGGCCAGCACAGCATCTCATTCACACTGTCCCGGAGTCACTCAGTCATAGTGGA
GTACACACATGACAGCGACAAAGACATGTTCCAGATTGGCCGCTCTACTGAAAACATGATTGACTTTGTG
GTAACAGACACATCTCCTGGTGGAGGGGCTACAGAGGGCCCTTCTGCCCAAAGTACCATCTCCCGCTATG
CCTGCAGAATTCTCTGTGACCGCCGGCCACCCTATACTGCCCGAATCTACGCTGCTGGCTTTGATGCCTC
TAGCAACATCTTTCTTGGAGAGCGGGCAGCCAAATGGAGGACTCCGGATGGTCTGATGGACGGCTTGACA
ACCAATGGGGTTCTGGTGATGCACCCAGCAGGTGGCTTCTCCGAGGACTCTGCCCCAGGTGTCTGGAGGG
AGATTTCTGTCTGCGGGAATGTGTACACGCTGCGGGATAGCCGATCAGCTCAGCAGCGGGGGAAGCTGGT
GGAAAACGAATCCAACGTCCTGCAAGACGGTTCGCTCATCGACCTGTGTGGGGCCACACTGTTGTGGCGC
ACTCCGGCTGGGTTGCTGAGGGCACCCACACTGAAACAACTAGAGGCCCAGCGACAGGAGGCCAACGCAG
CACGGCCCCAGTGCCCCGTGGGCCTTAGCACCTTGGCCTTCCCCAGCCCAGCCCGTGGCCGCACAGCACC
CGACAAACAGCAACCCTGGGTCTACGTCCGTTGTGGTCATGTCCATGGCTATCACGGCTGGGGCTGCCGG
AGGGAACAAGGCCCCCAGGAGCGAGAGTGTCCTCTCTGCCGCCTTGTGGGACCCTATGTGCCCCTGTGGC
TCGGTCAGGAGGCCGGTCTCTGCCTGGACCCTGGGCCACCCAGCCACGCTTTTGCACCCTGTGGCCACGT
CTGTTCTGAGAAGACTGCCCGCTACTGGGCTCAGACACCGCTGCCGCACGGCACCCATGCTTTCCACGCT
GCCTGCCCCTTCTGTGGAGCTTGGCTCACCGGTGAGCTTGGCTGTGTCCGCCTCATTTTCCAGGGGCCAC
TGGACTAG

Translation (445 aa):
MVLEGNPDVGSPRTSDLQHPGSQGSCILSCPGEEALAGEEPIKYGELIVLGYNGCLASGDKGRRRSRLAL
SRRPHANGVKPDVMHHISTPLVSKALSNRGQHSISFTLSRSHSVIVEYTHDSDKDMFQIGRSTENMIDFV
VTDTSPGGGATEGPSAQSTISRYACRILCDRRPPYTARIYAAGFDASSNIFLGERAAKWRTPDGLMDGLT
TNGVLVMHPAGGFSEDSAPGVWREISVCGNVYTLRDSRSAQQRGKLVENESNVLQDGSLIDLCGATLLWR
TPAGLLRAPTLKQLEAQRQEANAARPQCPVGLSTLAFPSPARGRTAPDKQQPWVYVRCGHVHGYHGWGCR
REQGPQERECPLCRLVGPYVPLWLGQEAGLCLDPGPPSHAFAPCGHVCSEKTARYWAQTPLPHGTHAFHA
ACPFCGAWLTGELGCVRLIFQGPLD


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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