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Report for CCDS47149.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47149.1 Public Homo sapiens 4 RNF175 24 110 108 CCDS HistoryNCBI Gene:285533Re-query CCDS DB by CCDS ID:47149.1Re-query CCDS DB by GeneID:285533See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47149.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000347063.9 ENSP00000340979.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000347063.9Link to Ensembl Protein Viewer:ENSP00000340979.4Re-query CCDS DB by Nucleotide ID:ENST00000347063Re-query CCDS DB by Protein ID:ENSP00000340979
Original member Current member NCBI NM_173662.4 NP_775933.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_173662.4Link to Protein Sequence:NP_775933.2Re-query CCDS DB by Nucleotide ID:NM_173662Re-query CCDS DB by Protein ID:NP_775933Link to BLAST:NP_775933.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775933.2 328 Q8N4F7-1 328 100% 0 0

Chromosomal Locations for CCDS 47149.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 153710369 153710489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 153712475 153712576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 153715529 153715662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 153720184 153720304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 153723351 153723458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 153728207 153728361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 153748645 153748786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 153751438 153751475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 153759797 153759862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (987 nt):
ATGGCCGCGGGGACGGCGGCGCGGAAGGCAGCGCCGGTGCTGGAGGCCCCCCCGCAGCAGGAGCAGCTCT
CTCATACAAAGCTTTCTGCAGAAGACACATGGAACCTGCAGCAGGAGAGGATGTACAAGATGCACCGGGG
CCACGATTCCATGCACGTGGAAATGATCTTGATCTTCCTCTGCGTTCTGGTCATTGCCCAGATAGTGCTG
GTTCAGTGGAGACAGAGGCATGGCCGATCCTACAATCTGGTGACCTTGTTGCAGATGTGGGTTGTCCCCT
TATATTTCACGATAAAATTATACTGGTGGCGGTTTCTGTCTATGTGGGGGATGTTCTCCGTTATTACCAG
TTACATCCTCTTCAGAGCTACCCGAAAACCCCTCTCAGGAAGGACACCACGATTGGTCTACAAATGGTTT
CTTTTGATCTACAAACTCAGCTATGCATTTGGTGTTGTGGGTTACTTGGCGATCATGTTTACAATGTGTG
GATTCAATCTGTTTTTCAAAATCAAAGCTAGAGATTCCATGGATTTTGGCATTGTGTCTTTGTTCTACGG
CCTCTACTATGGAGTAATGGGGAGAGACTTTGCCGAGATCTGCTCAGACTACATGGCTTCCACTATAGGG
TTCTACAGTGTCAGCCGGTTGCCTACAAGGAGCTTATCGGACAATATCTGTGCAGTCTGTGGGCAGAAGA
TCATTGTGGAGCTTGATGAAGAAGGGCTCATTGAAAACACCTACCAGCTTTCCTGTAATCATGTCTTTCA
TGAATTCTGCATCCGAGGTTGGTGTATCGTTGGGAAAAAGCAGACTTGCCCTTACTGCAAAGAGAAAGTT
GATTTGAAGAGGATGATCAGTAATCCCTGGGAGCGCACACATTTTCTGTATGGACAAATCCTGGATTGGC
TTCGTTATTTGGTGGCCTGGCAACCTGTGGTGATAGGAATAGTTCAAGGCATTATCTATTCACTAGGGCT
GGAATAG

Translation (328 aa):
MAAGTAARKAAPVLEAPPQQEQLSHTKLSAEDTWNLQQERMYKMHRGHDSMHVEMILIFLCVLVIAQIVL
VQWRQRHGRSYNLVTLLQMWVVPLYFTIKLYWWRFLSMWGMFSVITSYILFRATRKPLSGRTPRLVYKWF
LLIYKLSYAFGVVGYLAIMFTMCGFNLFFKIKARDSMDFGIVSLFYGLYYGVMGRDFAEICSDYMASTIG
FYSVSRLPTRSLSDNICAVCGQKIIVELDEEGLIENTYQLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKV
DLKRMISNPWERTHFLYGQILDWLRYLVAWQPVVIGIVQGIIYSLGLE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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