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Report for CCDS23966.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23966.1 Public Mus musculus 10 Ilvbl 23 108 98 CCDS HistoryNCBI Gene:216136Re-query CCDS DB by CCDS ID:23966.1Re-query CCDS DB by GeneID:216136See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23966.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000105384.4 ENSMUSP00000101023.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105384.4Link to Ensembl Protein Viewer:ENSMUSP00000101023.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000105384Re-query CCDS DB by Protein ID:ENSMUSP00000101023
Original member Current member EBI ENSMUST00000218885.1 ENSMUSP00000151263.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000218885.1Link to Ensembl Protein Viewer:ENSMUSP00000151263.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000218885Re-query CCDS DB by Protein ID:ENSMUSP00000151263
Original member Current member NCBI NM_001359302.1 NP_001346231.1 Accepted alive Link to Nucleotide Sequence:NM_001359302.1Link to Protein Sequence:NP_001346231.1Re-query CCDS DB by Nucleotide ID:NM_001359302Re-query CCDS DB by Protein ID:NP_001346231Link to BLAST:NP_001346231.1
Original member Current member NCBI NM_173751.4 NP_776112.1 Accepted alive Link to Nucleotide Sequence:NM_173751.4Link to Protein Sequence:NP_776112.1Re-query CCDS DB by Nucleotide ID:NM_173751Re-query CCDS DB by Protein ID:NP_776112Link to BLAST:NP_776112.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001346231.1 632 Q8BU33-1 632 100% 0 0
NP_776112.1 632 Q8BU33-1 632 100% 0 0

Chromosomal Locations for CCDS 23966.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 78575097 78575231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78576582 78576783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78576900 78577027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78577111 78577249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78577342 78577453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78579021 78579120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78579463 78579560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78579666 78579802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78581056 78581190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78583015 78583129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78583220 78583389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78583464 78583534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78583630 78583701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78583878 78583983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78584070 78584248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1899 nt):
ATGGAAACTTCTGCGGCCGCTGCATCTGCGGGAGGCTTCTTCCCCTCCTTCCTGCTCCTGGCGTTTGGGA
CGCTGGTGGCTGCCGTGCTGGGCGTCGCTCACAGACTGGGGCTCTTCTATCAGCTGATGCACAAGGTGGA
CAAGACAAGCATCCGGCATGGTGGAGAGAGTGTCGCAGCTGTGCTCCGAGCCCATGGTGTACGCTTTGTC
TTCACATTGGTCGGTGGGCACATTTCCCCACTGCTGGTGGCCTGTGAGAAGCTGGGTATCCGAGTGGTAG
ACACACGCCACGAGGTCACTGCTGTCTTTGCTGCTGATGCTGTGGCCCGCCTGACTGGGACAGTGGGTGT
GGCAGCAGTGACAGCCGGTCCTGGCCTCACCAACACTGTGACTGCAGTGAAGAATGCACAAGTGGCACAG
TCCCCAGTCCTGCTTTTGGGTGGAGCTGCCAGCACCCTGCTGCAGAAACGGGGCGCACTTCAGGCCATTG
ATCAGATGTCTCTGTTCAGGCCACTCTGCAAGTTTTGTGCTTCTGTGCGAAGGGTACGGGACATTGTACC
TACCCTGAGGACTGCAATAGCTGCTGCCCAGTCAGGCACCCCAGGTCCAGTGTTTGTGGAGCTGCCTCTT
GATGTACTATATCCTTACTTCATGGTTGAGAAGGAGATGATACCAACCAAGTTGCCCAATAGCCTCATGG
GCCGTGTGGTTGTCTGGTATTTACAGAACTGCCTGGCCAACCTCTTTGTTGGGGCTTGGGAACCTCGTCC
CGAGGGACCTCTGCCCTTGGATATTCCCCAGGCATCTCCGCAGCAGGTCCAGCGCTGTGTGGAGATCCTG
AGCCGGGCCAAGAGGCCTCTGCTGGTACTGGGGAGCCAGGCCTTGCTGCCCCCGACCCCTGCCAACAAGC
TTAGAGCTGCCGTGGAGACCCTGGGTGTCCCCTGCTTTCTAGGGGGGATGTCTCGGGGGCTGCTGGGCCG
CAACCACCCTCTCCACATCCGGCAGAACCGCAGCGCTGCTCTGAAGAAAGCAGATGTTGTTGTCCTGGCA
GGCGCTGTGTGTGATTTCCGCCTGTCTTATGGCCGGGTCCTCAACCGCAAGAGCAGCATCATCATTGTCA
ACCGGAACCGGGATGATCTCTTGCTCAACTCGGACATCTTCTGGAAGCCTCAGGAGGCTGTGCAGGGAGA
TGTGGGCTCCTTCATGATAAAACTGGTGGAAGGCCTTCAGGGCCAGATGTGGTCTTCAGATTGGGCTGAG
GAGCTTCGGAAAGCTGACCAGCAGAAGGAGCAGACCTATCGGGATAAGGCTTTAATGCCTGTATTACAGC
ACCTGAACCCAGTATGGGTGTTACAGCAGGTGGAGGAAACTCTGCCTGACAATGCACTTCTTGTGGTTGA
CGGAGGGGACTTTGTGGCCACTGCTGCCTACTTAGTCCAGCCCAGAGGGCCTCTGCGCTGGCTCGATCCT
GGGGCCTTTGGGACTCTGGGAGTTGGCGCAGGTTTTGCACTTGGGGCCAAGCTGTGTCAGCCGGAGGCTG
AGGTTTGGTGCCTGTTTGGGGATGGAGCCTTTGGCTACAGCCTCATTGAGTTTGACACGTTCGTCAGACA
TAAGGTACCAGTGATAGCCTTGGTAGGAAACGATGCAGGTTGGACCCAGATTTCTCGAGAGCAGGTGCCC
AGGTTGGGCAGTGATGTAGCCTGTAGCCTGGCTTACACTGATTATCACAAGGCAGCCATGGGCCTGGGGG
CCCAGGGATTGATACTCTCACGGGACAATAAGGATCAAGTGGTCAAGGTACTTCGTGAAGGCCAGCAGCT
GTGCCAGGATGGTCATGCAGTTGTGGTCAACATCCTGATTGGGAGGACAGACTTCCGAGATGGCTCCATT
TCTGTATAG

Translation (632 aa):
METSAAAASAGGFFPSFLLLAFGTLVAAVLGVAHRLGLFYQLMHKVDKTSIRHGGESVAAVLRAHGVRFV
FTLVGGHISPLLVACEKLGIRVVDTRHEVTAVFAADAVARLTGTVGVAAVTAGPGLTNTVTAVKNAQVAQ
SPVLLLGGAASTLLQKRGALQAIDQMSLFRPLCKFCASVRRVRDIVPTLRTAIAAAQSGTPGPVFVELPL
DVLYPYFMVEKEMIPTKLPNSLMGRVVVWYLQNCLANLFVGAWEPRPEGPLPLDIPQASPQQVQRCVEIL
SRAKRPLLVLGSQALLPPTPANKLRAAVETLGVPCFLGGMSRGLLGRNHPLHIRQNRSAALKKADVVVLA
GAVCDFRLSYGRVLNRKSSIIIVNRNRDDLLLNSDIFWKPQEAVQGDVGSFMIKLVEGLQGQMWSSDWAE
ELRKADQQKEQTYRDKALMPVLQHLNPVWVLQQVEETLPDNALLVVDGGDFVATAAYLVQPRGPLRWLDP
GAFGTLGVGAGFALGAKLCQPEAEVWCLFGDGAFGYSLIEFDTFVRHKVPVIALVGNDAGWTQISREQVP
RLGSDVACSLAYTDYHKAAMGLGAQGLILSRDNKDQVVKVLREGQQLCQDGHAVVVNILIGRTDFRDGSI
SV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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