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Report for CCDS13398.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13398.1 Public Homo sapiens 20 ELMO2 24 110 108 CCDS HistoryNCBI Gene:63916Re-query CCDS DB by CCDS ID:13398.1Re-query CCDS DB by GeneID:63916See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13398.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000290246.11 ENSP00000290246.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000290246.11Link to Ensembl Protein Viewer:ENSP00000290246.6Re-query CCDS DB by Nucleotide ID:ENST00000290246Re-query CCDS DB by Protein ID:ENSP00000290246
Original member Current member EBI ENST00000396391.5 ENSP00000379673.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000396391.5Link to Ensembl Protein Viewer:ENSP00000379673.1Re-query CCDS DB by Nucleotide ID:ENST00000396391Re-query CCDS DB by Protein ID:ENSP00000379673
Original member Current member NCBI NM_133171.5 NP_573403.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_133171.5Link to Protein Sequence:NP_573403.1Re-query CCDS DB by Nucleotide ID:NM_133171Re-query CCDS DB by Protein ID:NP_573403Link to BLAST:NP_573403.1
Original member Current member NCBI NM_182764.3 NP_877496.1 Accepted alive Link to Nucleotide Sequence:NM_182764.3Link to Protein Sequence:NP_877496.1Re-query CCDS DB by Nucleotide ID:NM_182764Re-query CCDS DB by Protein ID:NP_877496Link to BLAST:NP_877496.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_573403.1 720 Q96JJ3-1 720 100% 0 0
NP_877496.1 720 Q96JJ3-1 720 100% 0 0

Chromosomal Locations for CCDS 13398.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 46367360 46367560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46368891 46368968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46370443 46370525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46371352 46371459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46371579 46371691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46371806 46371969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46373399 46373535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46374332 46374440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46374536 46374640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46375236 46375370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46375668 46375790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46380253 46380303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46383416 46383494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46386124 46386275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46387338 46387437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46389039 46389220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46393093 46393143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46393529 46393601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46394049 46394089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46394405 46394482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2163 nt):
ATGCCACCACCGTCAGACATTGTCAAAGTGGCCATTGAGTGGCCAGGTGCTAACGCCCAGCTCCTTGAAA
TCGACCAGAAACGGCCCCTGGCATCCATTATCAAGGAAGTTTGTGATGGGTGGTCGTTGCCAAACCCAGA
GTATTATACCCTCCGTTATGCAGATGGTCCTCAGCTGTACATCACCGAACAGACTCGCAGTGACATTAAG
AATGGGACAATCTTACAACTGGCTATCTCCCCGTCCCGGGCTGCACGCCAGCTGATGGAGAGGACCCAGT
CATCCAACATGGAGACCCGGCTGGATGCCATGAAGGAGCTGGCCAAGCTCTCTGCCGACGTGACTTTCGC
TACTGAGTTCATCAACATGGATGGCATCATTGTGCTGACAAGGCTCGTGGAAAGTGGAACCAAGCTCTTG
TCCCACTACAGTGAGATGCTGGCATTCACCCTGACTGCCTTCCTAGAGCTCATGGACCATGGCATTGTCT
CCTGGGACATGGTTTCAATCACCTTTATTAAGCAGATTGCAGGGTATGTGAGCCAGCCCATGGTGGACGT
GTCAATCCTTCAGAGGTCCCTGGCCATCCTGGAGAGCATGGTCTTGAACAGCCAGAGTCTGTACCAGAAG
ATAGCCGAGGAAATCACCGTGGGACAGCTCATCTCACACCTCCAGGTCTCCAACCAGGAGATTCAGACCT
ACGCCATTGCACTGATTAATGCACTTTTTCTGAAGGCTCCTGAGGACAAACGACAGGATATGGCAAATGC
ATTTGCACAGAAGCATCTCCGGTCTATAATCCTGAATCATGTGATCCGAGGGAACCGCCCCATCAAAACT
GAGATGGCCCATCAGCTATATGTCCTTCAAGTCCTAACCTTTAACCTTCTGGAAGAAAGGATGATGACCA
AGATGGACCCCAATGACCAGGCTCAAAGGGACATCATATTTGAACTGAGGAGGATTGCATTTGACGCAGA
GTCTGATCCTAGCAATGCCCCTGGGAGTGGGACCGAAAAACGCAAAGCCATGTACACAAAGGACTACAAA
ATGCTGGGATTTACCAACCACATCAATCCAGCCATGGACTTTACCCAGACTCCTCCTGGAATGCTGGCCT
TGGACAACATGCTGTACTTGGCTAAAGTCCACCAGGACACCTACATCCGGATTGTCTTGGAGAACAGTAG
CCGGGAAGACAAACATGAATGCCCCTTTGGCCGCAGTGCCATTGAGCTCACCAAAATGCTCTGTGAAATC
CTGCAGGTTGGGGAACTACCAAATGAAGGACGCAATGACTACCACCCGATGTTCTTTACCCATGACCGAG
CCTTTGAAGAGCTCTTTGGAATCTGCATCCAGCTGTTGAACAAGACCTGGAAGGAGATGAGGGCAACAGC
AGAGGACTTCAACAAGGTTATGCAAGTCGTCCGAGAGCAAATCACTCGAGCTTTGCCCTCCAAACCCAAC
TCTTTGGATCAGTTCAAGAGCAAATTGCGTAGCCTGAGTTACTCTGAGATTCTACGACTGCGCCAGTCTG
AGAGGATGAGTCAGGATGACTTCCAGTCCCCGCCAATTGTGGAGCTGAGGGAGAAGATCCAGCCCGAGAT
CCTTGAGCTGATCAAGCAGCAGCGCCTGAACCGGCTCTGTGAGGGCAGCAGCTTCCGAAAGATTGGGAAC
CGCCGAAGGCAAGAACGGTTCTGGTACTGCCGGTTGGCACTGAACCACAAGGTCCTTCACTATGGTGACT
TGGATGACAACCCACAAGGGGAGGTGACATTTGAATCCCTGCAGGAGAAAATTCCTGTTGCAGACATTAA
GGCCATTGTCACTGGGAAAGATTGTCCCCACATGAAAGAGAAAAGTGCTCTGAAACAGAACAAGGAGGTG
TTGGAATTGGCCTTCTCCATCCTGTATGACCCTGATGAGACCTTAAACTTCATCGCACCTAATAAATATG
AGTACTGCATCTGGATTGATGGCCTCAGTGCCCTTCTGGGGAAGGACATGTCCAGTGAGCTGACCAAGAG
TGACCTGGACACCCTGCTGAGCATGGAGATGAAGCTGCGGCTCCTGGACCTGGAGAACATCCAGATTCCC
GAAGCCCCACCCCCCATCCCCAAGGAGCCCAGCAGCTATGACTTTGTCTATCACTATGGCTGA

Translation (720 aa):
MPPPSDIVKVAIEWPGANAQLLEIDQKRPLASIIKEVCDGWSLPNPEYYTLRYADGPQLYITEQTRSDIK
NGTILQLAISPSRAARQLMERTQSSNMETRLDAMKELAKLSADVTFATEFINMDGIIVLTRLVESGTKLL
SHYSEMLAFTLTAFLELMDHGIVSWDMVSITFIKQIAGYVSQPMVDVSILQRSLAILESMVLNSQSLYQK
IAEEITVGQLISHLQVSNQEIQTYAIALINALFLKAPEDKRQDMANAFAQKHLRSIILNHVIRGNRPIKT
EMAHQLYVLQVLTFNLLEERMMTKMDPNDQAQRDIIFELRRIAFDAESDPSNAPGSGTEKRKAMYTKDYK
MLGFTNHINPAMDFTQTPPGMLALDNMLYLAKVHQDTYIRIVLENSSREDKHECPFGRSAIELTKMLCEI
LQVGELPNEGRNDYHPMFFTHDRAFEELFGICIQLLNKTWKEMRATAEDFNKVMQVVREQITRALPSKPN
SLDQFKSKLRSLSYSEILRLRQSERMSQDDFQSPPIVELREKIQPEILELIKQQRLNRLCEGSSFRKIGN
RRRQERFWYCRLALNHKVLHYGDLDDNPQGEVTFESLQEKIPVADIKAIVTGKDCPHMKEKSALKQNKEV
LELAFSILYDPDETLNFIAPNKYEYCIWIDGLSALLGKDMSSELTKSDLDTLLSMEMKLRLLDLENIQIP
EAPPPIPKEPSSYDFVYHYG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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