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Report for CCDS2683.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2683.1 Public Homo sapiens 3 XIRP1 24 110 108 CCDS HistoryNCBI Gene:165904Re-query CCDS DB by CCDS ID:2683.1Re-query CCDS DB by GeneID:165904See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2683.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000340369.4 ENSP00000343140.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000340369.4Link to Ensembl Protein Viewer:ENSP00000343140.3Re-query CCDS DB by Nucleotide ID:ENST00000340369Re-query CCDS DB by Protein ID:ENSP00000343140
Original member Current member NCBI NM_194293.4 NP_919269.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_194293.4Link to Protein Sequence:NP_919269.2Re-query CCDS DB by Nucleotide ID:NM_194293Re-query CCDS DB by Protein ID:NP_919269Link to BLAST:NP_919269.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_919269.2 1843 Q702N8-1 1843 100% 0 0

Chromosomal Locations for CCDS 2683.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 39183914 39189445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5532 nt):
ATGGCCGACACCCAGACACAGGTGGCCCCCACACCAACCATGAGGATGGCAACTGCAGAGGACCTGCCCC
TCCCTCCACCCCCAGCCCTGGAGGACCTGCCACTGCCGCCACCCAAGGAATCCTTCTCCAAGTTCCATCA
GCAGCGGCAAGCTAGTGAGCTCCGCCGCCTCTACAGGCACATCCACCCTGAGCTCCGCAAGAATCTGGCT
GAGGCTGTGGCCGAGGATCTGGCTGAGGTCCTGGGCTCTGAGGAACCCACCGAGGGTGACGTTCAGTGCA
TGCGCTGGATCTTTGAGAACTGGAGACTGGATGCCATTGGAGAACACGAGAGGCCAGCTGCCAAGGAGCC
CGTGCTGTGTGGTGACGTCCAGGCCACCTCCCGCAAGTTTGAGGAAGGCTCCTTTGCCAACAGCACAGAC
CAGGAGCCAACCAGGCCCCAGCCAGGTGGAGGAGACGTTCGTGCAGCCCGCTGGCTATTTGAGACAAAGC
CACTGGACGAGCTGACAGGGCAAGCCAAGGAACTGGAGGCCACTGTGAGGGAGCCTGCAGCCAGCGGAGA
TGTGCAGGGTACCAGGATGCTCTTTGAGACGCGGCCGCTGGACCGCCTGGGCTCCCGCCCCTCCCTGCAG
GAGCAGAGCCCCTTGGAACTGCGCTCAGAGATCCAGGAGCTGAAGGGTGATGTGAAAAAGACAGTGAAGC
TCTTCCAAACGGAGCCCCTGTGTGCCATCCAGGATGCAGAGGGCGCCATCCATGAGGTCAAGGCCGCATG
CCGGGAGGAGATCCAAAGCAACGCGGTGAGGTCTGCCCGCTGGCTCTTTGAGACCCGGCCTCTGGACGCC
ATCAACCAGGACCCCAGCCAGGTGCGGGTGATCCGGGGGATTTCCCTGGAGGAGGGGGCCCGGCCCGACG
TCAGTGCAACTCGCTGGATCTTTGAGACACAGCCCCTGGATGCCATCCGGGAGATCTTGGTAGATGAGAA
GGACTTCCAGCCATCCCCAGACCTTATCCCACCTGGTCCAGATGTTCAGCAGCAGCAGCATCTGTTTGAG
ACCCGAGCGCTGGACACTCTGAAGGGGGACGAAGAGGCTGGAGCAGAGGCCCCACCCAAGGAGGAAGTGG
TCCCTGGTGATGTCCGCTCCACCCTGTGGCTATTTGAAACAAAGCCCCTGGATGCTTTCAGAGACAAGGT
CCAAGTGGGTCACCTACAGCGAGTGGATCCCCAGGACGGTGAGGGGCATCTATCCAGTGACAGCTCCTCA
GCACTGCCCTTCTCTCAGAGTGCCCCCCAGAGGGATGAGCTAAAGGGGGATGTGAAGACTTTTAAGAACC
TTTTTGAGACCCTTCCCTTGGACAGCATTGGACAGGGTGAGGTTCTGGCCCATGGGAGTCCAAGCAGAGA
AGAAGGAACTGATTCTGCTGGGCAGGCCCAGGGCATAGGGTCCCCAGTGTATGCCATGCAGGACAGCAAG
GGCCGCCTCCATGCCCTGACCTCTGTTAGCAGAGAGCAGATAGTCGGAGGTGATGTGCAGGGCTACAGGT
GGATGTTTGAGACACAGCCCCTAGACCAGCTCGGCCGAAGCCCCAGTACCATCGACGTGGTGCGGGGCAT
CACCCGGCAGGAAGTGGTGGCTGGGGACGTTGGCACAGCTCGGTGGCTTTTTGAGACCCAGCCCCTGGAG
ATGATCCACCAACGGGAGCAGCAGGAACGACAGAAAGAAGAAGGGAAGAGTCAGGGAGACCCCCAGCCTG
AGGCACCCCCAAAGGGCGATGTGCAGACCATCCGGTGGTTGTTCGAGACTTGCCCAATGAGTGAGTTGGC
CGAAAAGCAGGGGTCAGAGGTCACAGATCCCACAGCCAAGGCTGAGGCACAGTCCTGCACCTGGATGTTC
AAGCCCCAACCTGTGGACAGGCCAGTGGGCTCCAGGGAGCAGCACCTGCAGGTTAGCCAGGTCCCGGCTG
GGGAAAGACAGACAGACAGACACGTCTTTGAGACCGAGCCTCTTCAGGCCTCAGGCCGTCCCTGTGGAAG
ACGGCCTGTGAGATACTGCAGCCGCGTGGAGATCCCTTCAGGGCAGGTGTCTCGTCAGAAAGAGGTTTTT
CAGGCCCTGGAGGCAGGCAAGAAGGAAGAACAGGAGCCCCGGGTAATCGCTGGGTCCATCCCCGCGGGTT
CTGTCCACAAGTTCACTTGGCTTTTTGAGAATTGTCCCATGGGCTCCCTGGCAGCTGAGAGCATCCAAGG
GGGCAACCTCCTGGAAGAGCAGCCCATGAGCCCCTCAGGCAACAGGATGCAAGAGAGCCAGGAGACTGCA
GCTGAGGGGACCCTGCGGACTCTGCATGCCACACCTGGCATCCTGCACCATGGAGGCATCCTCATGGAGG
CCCGAGGGCCAGGGGAGCTCTGTCTTGCCAAGTATGTGCTCTCGGGCACAGGGCAGGGGCACCCTTATAT
ACGAAAGGAGGAGCTGGTGTCAGGTGAACTTCCCAGGATCATCTGCCAAGTCCTGCGCCGGCCAGATGTG
GACCAGCAGGGGCTGCTGGTGCAGGAAGACCCAACTGGCCAGCTCCAACTCAAGCCGCTGAGGCTGCCAA
CTCCAGGCAGCAGTGGGAATATTGAAGACATGGACCCTGAGCTCCAGCAGCTGCTGGCTTGCGGTCTTGG
GACCTCCGTGGCAAGGACTGGGCTGGTGATGCAGGAGACAGAGCAGGGCCTGGTCGCACTGACTGCCTAC
TCTCTGCAGCCCCGGCTAACTAGCAAGGCCTCTGAGAGGAGCAGCGTGCAGCTGTTGGCCAGCTGCATAG
ATAAAGGAGACCTGAGTGGCCTGCACAGTCTGCGGTGGGAGCCCCCGGCTGACCCGAGTCCAGTGCCAGC
CAGCGAGGGGGCCCAGAGCCTGCACCCAACTGAGAGCATCATCCATGTTCCCCCACTGGACCCCAGCATG
GGGATGGGGCATCTGAGAGCCTCAGGGGCCACCCCTTGCCCTCCTCAGGCCATTGGAAAGGCAGTCCCTC
TGGCTGGGGAAGCTGCAGCACCAGCCCAATTGCAAAACACAGAAAAGCAGGAAGACAGTCACTCTGGACA
GAAAGGGATGGCAGTCTTGGGAAAGTCAGAAGGAGCCACGACTACCCCTCCGGGGCCTGGGGCCCCAGAC
CTCCTGGCCGCCATGCAGAGTCTGCGGATGGCAACAGCTGAAGCCCAGAGCCTGCACCAGCAAGTTCTGA
ACAAGCACAAGCAGGGCCCCACCCCAACAGCCACTTCCAACCCCATCCAGGACGGTCTTCGGAAAGCTGG
GGCTACCCAAAGCAACATAAGGCCTGGGGGTGGAAGTGATCCCCGGATCCCAGCAGCCCCCAGAAAGGTC
AGTAGGGAAGAGCAAGCACTACCCAGAGGGCTGCCTGGGGGGTGGGTGACAATTCAGGATGGCATCTACA
CCGCTCATCCCGTGAGGACCTTTGACCCACCTGGGGGTGTCCAGCTTTCTCAGAGGGAACCCCAGTCAAG
GCACAGGGAGACTGCCCTCTCAGTCCAGGCTCCCCGCCCACTCCAGGGAGGCCCAGGTCAGAGTACTGGG
CCAGGGCGGGAGGAGCCTGGGGGCTGCACACAGATGGCCTGGGGGCCACCAGGGAAGGCGATGGCAGAAG
TCTGCCCAGGGGGCCTCCAAGCTGCAGAGACCACCCTGAAGACTGCCCCTCTAGGCCGCCACATTCTGGC
CTCTGGGCCCCAAGCTGCAGGTGCCAGCCCGCACCCCCATAATGCCTTTGTTCCTCCTCCTCCTACTCTC
CCAGCTGCTGTGACAGGACCTGACTTTCCAGCTGGAGCCCACCGTGCTGAGGACTCCATCCAGCAAGCCT
CTGAGCCCCTGAAGGACCCCCTTCTTCACTCCCACAGCAGCCCTGCTGGCCAGAGAACCCCTGGAGGGTC
ACAGACAAAGACCCCAAAACTGGACCCCACCATGCCCCCAAAGAAGAAGCCGCAGCTGCCCCCTAAACCT
GCACACCTAACCCAGAGCCACCCTCCTCAGAGGCTGCCCAAGCCCTTGCCTCTATCTCCCAGCTTTTCCT
CGGAGGTGGGGCAAAGAGAACACCAACGAGGTGAGAGAGATACAGCCATCCCTCAGCCAGCCAAGGTTCC
CACTACTGTAGACCAGGGCCACATACCTCTGGCCAGATGTCCCAGTGGACATAGCCAGCCCAGCTTACAA
CATGGCCTCAGCACCACGGCCCCCAGGCCCACCAAGAATCAGGCTACAGGCAGCAATGCCCAGAGCTCTG
AGCCCCCCAAGCTCAATGCCCTCAACCATGATCCCACCTCACCACAGTGGGGCCCCGGCCCCTCAGGAGA
GCAGCCCATGGAAGGTTCCCACCAAGGGGCCCCTGAGAGCCCTGACAGTCTGCAAAGAAACCAGAAAGAG
CTCCAGGGCCTCCTGAACCAGGTGCAAGCCCTGGAGAAGGAGGCCGCAAGCAGTGTGGACGTGCAGGCCC
TGCGGAGGCTCTTTGAGGCCGTGCCCCAGCTGGGAGGGGCTGCTCCTCAGGCTCCTGCTGCCCACCAAAA
GCCCGAGGCCTCAGTGGAGCAGGCCTTTGGGGAGCTGACACGGGTCAGCACGGAAGTTGCTCAACTGAAG
GAACAGACCTTGGCAAGGCTGCTGGACATTGAAGAGGCTGTGCACAAGGCACTCAGCTCCATGTCTAGCC
TCCAGCCTGAGGCCAGTGCCAGAGGCCATTTCCAGGGACCTCCAAAAGACCACAGTGCCCACAAGATCAG
TGTCACAGTCAGCAGTAGCGCCAGGCCCAGTGGCTCAGGCCAGGAGGTCGGAGGTCAAACTGCAGTCAAG
AACCAAGCCAAGGTTGAATGCCACACTGAGGCCCAGAGTCAAGTCAAGATCAGAAATCACACAGAGGCCA
GAGGTCACACAGCCTCAACTGCCCCTTCCACCAGGAGGCAGGAGACATCAAGAGAGTATTTGTGCCCTCC
TCGGGTTTTACCTTCCAGCCGAGATTCTCCCTCCTCCCCAACATTTATCTCCATCCAGTCGGCCACAAGG
AAGCCTCTAGAGACTCCCAGCTTTAAGGGCAACCCTGATGTCTCAGTGAAAAGCACACAACTGGCTCAGG
ACATAGGCCAGGCCCTGCTCCACCAGAAAGGTGTCCAAGACAAAACTGGGAAGAAGGACATCACCCAGTG
CTCTGTGCAACCTGAACCTGCCCCTCCCTCAGCCAGTCCCCTGCCCAGAGGGTGGCAAAAGAGTGTTCTG
GAGCTACAGACGGGGCCAGGGAGCTCACAACACTATGGAGCCATGAGAACCGTGACTGAACAGTATGAGG
AGGTGGACCAGTTTGGGAACACAGTCCTCATGTCTTCCACCACAGTCACCGAGCAGGCAGAGCCACCCAG
GAACCCAGGCTCCCACCTCGGGCTCCACGCCTCCCCCTTGCTGAGGCAGTTCCTGCACAGCCCAGCTGGG
TTCAGCAGTGACCTGACAGAAGCTGAGACGGTGCAGGTGTCCTGCAGCTACTCCCAGCCAGCTGCCCAGT
GA

Translation (1843 aa):
MADTQTQVAPTPTMRMATAEDLPLPPPPALEDLPLPPPKESFSKFHQQRQASELRRLYRHIHPELRKNLA
EAVAEDLAEVLGSEEPTEGDVQCMRWIFENWRLDAIGEHERPAAKEPVLCGDVQATSRKFEEGSFANSTD
QEPTRPQPGGGDVRAARWLFETKPLDELTGQAKELEATVREPAASGDVQGTRMLFETRPLDRLGSRPSLQ
EQSPLELRSEIQELKGDVKKTVKLFQTEPLCAIQDAEGAIHEVKAACREEIQSNAVRSARWLFETRPLDA
INQDPSQVRVIRGISLEEGARPDVSATRWIFETQPLDAIREILVDEKDFQPSPDLIPPGPDVQQQQHLFE
TRALDTLKGDEEAGAEAPPKEEVVPGDVRSTLWLFETKPLDAFRDKVQVGHLQRVDPQDGEGHLSSDSSS
ALPFSQSAPQRDELKGDVKTFKNLFETLPLDSIGQGEVLAHGSPSREEGTDSAGQAQGIGSPVYAMQDSK
GRLHALTSVSREQIVGGDVQGYRWMFETQPLDQLGRSPSTIDVVRGITRQEVVAGDVGTARWLFETQPLE
MIHQREQQERQKEEGKSQGDPQPEAPPKGDVQTIRWLFETCPMSELAEKQGSEVTDPTAKAEAQSCTWMF
KPQPVDRPVGSREQHLQVSQVPAGERQTDRHVFETEPLQASGRPCGRRPVRYCSRVEIPSGQVSRQKEVF
QALEAGKKEEQEPRVIAGSIPAGSVHKFTWLFENCPMGSLAAESIQGGNLLEEQPMSPSGNRMQESQETA
AEGTLRTLHATPGILHHGGILMEARGPGELCLAKYVLSGTGQGHPYIRKEELVSGELPRIICQVLRRPDV
DQQGLLVQEDPTGQLQLKPLRLPTPGSSGNIEDMDPELQQLLACGLGTSVARTGLVMQETEQGLVALTAY
SLQPRLTSKASERSSVQLLASCIDKGDLSGLHSLRWEPPADPSPVPASEGAQSLHPTESIIHVPPLDPSM
GMGHLRASGATPCPPQAIGKAVPLAGEAAAPAQLQNTEKQEDSHSGQKGMAVLGKSEGATTTPPGPGAPD
LLAAMQSLRMATAEAQSLHQQVLNKHKQGPTPTATSNPIQDGLRKAGATQSNIRPGGGSDPRIPAAPRKV
SREEQALPRGLPGGWVTIQDGIYTAHPVRTFDPPGGVQLSQREPQSRHRETALSVQAPRPLQGGPGQSTG
PGREEPGGCTQMAWGPPGKAMAEVCPGGLQAAETTLKTAPLGRHILASGPQAAGASPHPHNAFVPPPPTL
PAAVTGPDFPAGAHRAEDSIQQASEPLKDPLLHSHSSPAGQRTPGGSQTKTPKLDPTMPPKKKPQLPPKP
AHLTQSHPPQRLPKPLPLSPSFSSEVGQREHQRGERDTAIPQPAKVPTTVDQGHIPLARCPSGHSQPSLQ
HGLSTTAPRPTKNQATGSNAQSSEPPKLNALNHDPTSPQWGPGPSGEQPMEGSHQGAPESPDSLQRNQKE
LQGLLNQVQALEKEAASSVDVQALRRLFEAVPQLGGAAPQAPAAHQKPEASVEQAFGELTRVSTEVAQLK
EQTLARLLDIEEAVHKALSSMSSLQPEASARGHFQGPPKDHSAHKISVTVSSSARPSGSGQEVGGQTAVK
NQAKVECHTEAQSQVKIRNHTEARGHTASTAPSTRRQETSREYLCPPRVLPSSRDSPSSPTFISIQSATR
KPLETPSFKGNPDVSVKSTQLAQDIGQALLHQKGVQDKTGKKDITQCSVQPEPAPPSASPLPRGWQKSVL
ELQTGPGSSQHYGAMRTVTEQYEEVDQFGNTVLMSSTTVTEQAEPPRNPGSHLGLHASPLLRQFLHSPAG
FSSDLTEAETVQVSCSYSQPAAQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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