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Report for CCDS12542.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12542.1 Public Homo sapiens 19 LGALS14 24 110 108 CCDS HistoryNCBI Gene:56891Re-query CCDS DB by CCDS ID:12542.1Re-query CCDS DB by GeneID:56891See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12542.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000360675.7 ENSP00000353893.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000360675.7Link to Ensembl Protein Viewer:ENSP00000353893.2Re-query CCDS DB by Nucleotide ID:ENST00000360675Re-query CCDS DB by Protein ID:ENSP00000353893
Original member Current member NCBI NM_203471.2 NP_982297.1 Accepted alive Link to Nucleotide Sequence:NM_203471.2Link to Protein Sequence:NP_982297.1Re-query CCDS DB by Nucleotide ID:NM_203471Re-query CCDS DB by Protein ID:NP_982297Link to BLAST:NP_982297.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_982297.1 168 Q8TCE9-2 168 100% 0 0

Chromosomal Locations for CCDS 12542.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 39705908 39706009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 39706597 39706673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 39707178 39707388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 39709197 39709313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (507 nt):
ATGTCCCTGACCCACAGGCTTCATTTGTGCAAGTACTGGGGCTGTGCTGTCAGTAATGTGTGCCGCTTCT
GGGAAGGACGTCCATTGCCCTTGATGATTGTGGTACCATACACACTGCCTGTTTCCTTGCCTGTTGGTTC
GTGCGTGATAATCACAGGGACACCGATCCTCACTTTTGTCAAGGACCCACAGCTGGAGGTGAATTTCTAC
ACTGGGATGGATGAGGACTCAGATATTGCTTTCCAATTCCGACTGCACTTTGGTCATCCTGCAATCATGA
ACAGTTGTGTGTTTGGCATATGGAGATATGAGGAGAAATGCTACTATTTACCCTTTGAAGATGGCAAACC
ATTTGAGCTGTGCATCTATGTGCGTCACAAGGAATACAAGGTAATGGTAAATGGCCAACGCATTTACAAC
TTTGCCCATCGATTCCCGCCAGCATCTGTGAAGATGCTGCAAGTCTTCAGAGATATCTCCCTGACCAGAG
TGCTTATCAGCGATTGA

Translation (168 aa):
MSLTHRLHLCKYWGCAVSNVCRFWEGRPLPLMIVVPYTLPVSLPVGSCVIITGTPILTFVKDPQLEVNFY
TGMDEDSDIAFQFRLHFGHPAIMNSCVFGIWRYEEKCYYLPFEDGKPFELCIYVRHKEYKVMVNGQRIYN
FAHRFPPASVKMLQVFRDISLTRVLISD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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