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Report for CCDS48524.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48524.1 Public Mus musculus 10 Samd3 23 108 98 CCDS HistoryNCBI Gene:268288Re-query CCDS DB by CCDS ID:48524.1Re-query CCDS DB by GeneID:268288See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 48524.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000164660.7 ENSMUSP00000129054.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164660.7Link to Ensembl Protein Viewer:ENSMUSP00000129054.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000164660Re-query CCDS DB by Protein ID:ENSMUSP00000129054
Original member NCBI NM_001013766.2 NP_001013788.2 Updated not alive Link to Nucleotide Sequence:NM_001013766.2Link to Protein Sequence:NP_001013788.2Re-query CCDS DB by Nucleotide ID:NM_001013766Re-query CCDS DB by Protein ID:NP_001013788
Current member NCBI NM_001013766.3 NP_001013788.2 Accepted alive Link to Nucleotide Sequence:NM_001013766.3Link to Protein Sequence:NP_001013788.2Re-query CCDS DB by Nucleotide ID:NM_001013766Re-query CCDS DB by Protein ID:NP_001013788Link to BLAST:NP_001013788.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001013788.2 273 Q8C4H2-2 273 100% 0 0

Chromosomal Locations for CCDS 48524.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 26230126 26230204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 26230828 26231017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 26233526 26233627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 26244481 26244666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 26245544 26245628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 26251749 26251916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 26259125 26259136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (822 nt):
ATGGAAACGTGGTCAGTTGATCAGGTCTGCAAATGGTTGGTGGAAAAAAACTTAGGTGAGCTAGTCCCCA
GGTTTCAAGAGGAAGAAGTCAGTGGGGCCACACTCCTGGCCCTTAATGATCGGATGGTACAGCAACTGGT
AAAGAAAATTGGACACCAGGCTGTTCTGATGGACTTCATTAAGAAATACAAGCAGGGCAATCAAGAGCTG
AAGCCTACGGGAGGCCCCGCAGATACATCCACGCTGACCCCGGCACAAGCGGCCCCTGAGCACGAACAAA
ACCCTAGTCCCACCAGCCACGGGGACCAGACATCTTTGTATCCAGCCGTCCTTGACAATAGACTCATTGA
TCAAAGAGTATTGAAGCAGAGAAGAAATGTAAAACATGTTCTAGCAAGGCATAAAGCATTACAGTGGACT
AAGTCCTACATCTTACCGGAGTTTCCCTATGATGTCAAGTGCATGTTGGTGGAGCAGAAGCGCCCCGACC
ACAGCATGCGGATAAGGATCATTGAGTTTCTCCAGGCAGATATGACTAAGTACCTGGAAGGCTCGCTGTA
CCCCACCACCCAGCAGTACAACGACGTGGTCAATGCTCTGCTGCAGGCCCACCCTTTCCTGGATGAGGAC
GGCTGTGGCTTTTTTTTATGGAAACGAGCCCTCAAAGATCGCTTTAAATATATTCGAAGACCCATAGAAG
ATGATGAACAAGTAATGAGGAATAAGTGTAAATTTGGACACCGAAGAGGCCAGACAAGGAAGTCTCTTGC
TGACATACAATCGAATGAAATTAAAATTGTGCAGATCAAACCATCAGCCTAG

Translation (273 aa):
METWSVDQVCKWLVEKNLGELVPRFQEEEVSGATLLALNDRMVQQLVKKIGHQAVLMDFIKKYKQGNQEL
KPTGGPADTSTLTPAQAAPEHEQNPSPTSHGDQTSLYPAVLDNRLIDQRVLKQRRNVKHVLARHKALQWT
KSYILPEFPYDVKCMLVEQKRPDHSMRIRIIEFLQADMTKYLEGSLYPTTQQYNDVVNALLQAHPFLDED
GCGFFLWKRALKDRFKYIRRPIEDDEQVMRNKCKFGHRRGQTRKSLADIQSNEIKIVQIKPSA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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