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Report for CCDS1219.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1219.1 Public Homo sapiens 1 DEDD 24 110 108 CCDS HistoryNCBI Gene:9191Re-query CCDS DB by CCDS ID:1219.1Re-query CCDS DB by GeneID:9191See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1219.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000368006.8 ENSP00000356985.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000368006.8Link to Ensembl Protein Viewer:ENSP00000356985.3Re-query CCDS DB by Nucleotide ID:ENST00000368006Re-query CCDS DB by Protein ID:ENSP00000356985
Original member Current member EBI ENST00000458050.6 ENSP00000414821.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000458050.6Link to Ensembl Protein Viewer:ENSP00000414821.2Re-query CCDS DB by Nucleotide ID:ENST00000458050Re-query CCDS DB by Protein ID:ENSP00000414821
Original member Current member EBI ENST00000545495.5 ENSP00000445835.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000545495.5Link to Ensembl Protein Viewer:ENSP00000445835.1Re-query CCDS DB by Nucleotide ID:ENST00000545495Re-query CCDS DB by Protein ID:ENSP00000445835
Original member Current member EBI ENST00000490843.6 ENSP00000476946.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000490843.6Link to Ensembl Protein Viewer:ENSP00000476946.1Re-query CCDS DB by Nucleotide ID:ENST00000490843Re-query CCDS DB by Protein ID:ENSP00000476946
Original member Current member NCBI NM_001039711.2 NP_001034800.1 Accepted alive Link to Nucleotide Sequence:NM_001039711.2Link to Protein Sequence:NP_001034800.1Re-query CCDS DB by Nucleotide ID:NM_001039711Re-query CCDS DB by Protein ID:NP_001034800Link to BLAST:NP_001034800.1
Original member Current member NCBI NM_001039712.2 NP_001034801.1 Accepted alive Link to Nucleotide Sequence:NM_001039712.2Link to Protein Sequence:NP_001034801.1Re-query CCDS DB by Nucleotide ID:NM_001039712Re-query CCDS DB by Protein ID:NP_001034801Link to BLAST:NP_001034801.1
Original member Current member NCBI NM_032998.3 NP_127491.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032998.3Link to Protein Sequence:NP_127491.1Re-query CCDS DB by Nucleotide ID:NM_032998Re-query CCDS DB by Protein ID:NP_127491Link to BLAST:NP_127491.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001034800.1 318 O75618-1 318 100% 0 0
NP_001034801.1 318 O75618-1 318 100% 0 0
NP_127491.1 318 O75618-1 318 100% 0 0

Chromosomal Locations for CCDS 1219.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 161122147 161122523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161123075 161123221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161123839 161123946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161124138 161124462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (957 nt):
ATGGCGGGCCTAAAGCGGCGGGCAAGCCAGGTGTGGCCAGAAGAGCATGGTGAGCAGGAACATGGGCTGT
ACAGCCTGCACCGCATGTTTGACATCGTGGGCACTCATCTGACACACAGAGATGTGCGCGTGCTTTCTTT
CCTCTTTGTTGATGTCATTGATGACCACGAGCGTGGACTCATCCGAAATGGACGTGACTTCTTATTGGCA
CTGGAGCGCCAGGGCCGCTGTGATGAAAGTAACTTTCGCCAGGTGCTGCAGCTGCTGCGCATCATCACTC
GCCACGACCTGCTGCCCTACGTCACCCTCAAGAGGAGACGGGCTGTGTGCCCTGATCTTGTAGACAAGTA
TCTGGAGGAGACATCAATTCGCTATGTGACCCCCAGAGCCCTCAGTGATCCAGAACCAAGGCCTCCCCAG
CCCTCTAAAACAGTGCCTCCCCACTATCCTGTGGTGTGTTGCCCCACTTCGGGTCCTCAGATGTGTAGCA
AGCGGCCAGCCCGAGGGAGAGCCACACTTGGGAGCCAGCGAAAACGCCGGAAGTCAGTGACACCAGATCC
CAAGGAGAAGCAGACATGTGACATCAGACTGCGGGTTCGGGCTGAATACTGCCAGCATGAGACTGCTCTG
CAGGGCAATGTCTTCTCTAACAAGCAGGACCCACTTGAGCGCCAGTTTGAGCGCTTTAACCAGGCCAACA
CCATCCTCAAGTCCCGGGACCTGGGCTCCATCATCTGTGACATCAAGTTCTCTGAGCTCACCTACCTCGA
TGCATTCTGGCGTGACTACATCAATGGCTCTTTATTAGAGGCACTTAAAGGTGTCTTCATCACAGACTCC
CTCAAGCAAGCTGTGGGCCATGAAGCCATCAAGCTGCTGGTAAATGTAGACGAGGAGGACTATGAGCTGG
GCCGACAGAAACTCCTGAGGAACTTGATGCTGCAAGCATTGCCCTGA

Translation (318 aa):
MAGLKRRASQVWPEEHGEQEHGLYSLHRMFDIVGTHLTHRDVRVLSFLFVDVIDDHERGLIRNGRDFLLA
LERQGRCDESNFRQVLQLLRIITRHDLLPYVTLKRRRAVCPDLVDKYLEETSIRYVTPRALSDPEPRPPQ
PSKTVPPHYPVVCCPTSGPQMCSKRPARGRATLGSQRKRRKSVTPDPKEKQTCDIRLRVRAEYCQHETAL
QGNVFSNKQDPLERQFERFNQANTILKSRDLGSIICDIKFSELTYLDAFWRDYINGSLLEALKGVFITDS
LKQAVGHEAIKLLVNVDEEDYELGRQKLLRNLMLQALP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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