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Report for CCDS35530.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35530.1 Public Mus musculus 1 Phf3 23 108 98 CCDS HistoryNCBI Gene:213109Re-query CCDS DB by CCDS ID:35530.1Re-query CCDS DB by GeneID:213109See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35530.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000088310.9 ENSMUSP00000085650.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000088310.9Link to Ensembl Protein Viewer:ENSMUSP00000085650.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000088310Re-query CCDS DB by Protein ID:ENSMUSP00000085650
Original member Current member EBI ENSMUST00000186733.6 ENSMUSP00000139610.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000186733.6Link to Ensembl Protein Viewer:ENSMUSP00000139610.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000186733Re-query CCDS DB by Protein ID:ENSMUSP00000139610
Original member NCBI NM_001081080.1 NP_001074549.1 Updated not alive Link to Nucleotide Sequence:NM_001081080.1Link to Protein Sequence:NP_001074549.1Re-query CCDS DB by Nucleotide ID:NM_001081080Re-query CCDS DB by Protein ID:NP_001074549
Current member NCBI NM_001081080.2 NP_001074549.1 Accepted alive Link to Nucleotide Sequence:NM_001081080.2Link to Protein Sequence:NP_001074549.1Re-query CCDS DB by Nucleotide ID:NM_001081080Re-query CCDS DB by Protein ID:NP_001074549Link to BLAST:NP_001074549.1

Chromosomal Locations for CCDS 35530.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 30803799 30805942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 30806169 30806364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 30808723 30808812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 30810683 30810830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 30811772 30811967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 30813017 30813152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 30813960 30814091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 30816468 30816584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 30820081 30820237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 30820683 30820827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 30821131 30821314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 30824210 30824519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 30829843 30831559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 30837105 30837266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 30862987 30863230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (6078 nt):
ATGGATATAGTTGATACATTTAATCATTTAATTCCTACTGAACACTTAGATGATGCCCTATTTCTAGGAT
CCAACCTGGAGAATGAAGTCTGTGAGGATTTTAGTACAAGTCAAAATGTCTTAGAGGACTCGCTGAAGAA
CATGCTCAGCGATAAGGATCCTATGCTAGGATCTGCAAGTAACCAGTTCTGTTTGCCTGTTTTGGATAGC
AATGATCCCAATTTCCAGATGCCTTGTTCAACAGTTGTTGGTCTTGACGATATTATGGATGAAGGAGTTG
TTAAAGAAAGTGGTAATGATACCATTGATGAAGAAGAATTGATTTTACCTAACAGGAGTTTGAGGGACAG
AGTAGAAGACAATTCAGTAAGATCACCAAGAAAATCACCTCGTTTAATGGCACAAGAACAAGTAAGAAGT
TTGCGACAAAGCACTATTGCCAAGCGTTCAAATGCAGCAACTCTAAGCACAAAAAAGCCATCTGGGAAGA
CCTTATCTACCTCTAAAGTAGGGGTGAAGCCAGCAGAAAGATGTCAGGGTAAAGAAGAAGTTTATGCCTC
ACTGAAATCTGAACACCCTAAGGAGAGTAGAAGGAGTGGCCGGCATGCTGAACAGATGGACGTGGCGCCA
GAAGTCTCAGCATCTTCAGTTGATTCTTCAGTGTCGTCTTGTGCTGGAATGAAGGAGGAGGCTGAGTTTG
ATCCCAAACATGCATGCAATAATCAGGGTGAAGTGAACGTGCCATCTCCTGAGTTAGATTGTCCACTTCT
CTCAGAGACTAGTGCTAGTGTGGAAGAGAAGAACATTGAGGCTCTGATGGAATGTAAAGCTAAGACTAAC
AGTAGCCCGTTATTTAAGTTTCCAGTTAGAGAAGATGAGCAGAGTGATCTTGTTTCGGGTGAACTGAATG
ACACCATTGAAGGAAAGGATGCAGGGGGAAAACCTGATCAAGAATCAGAGGAGGTGAAGTTTCCCTGCGA
AGGTGACCAGACGGCCGAGGAACCCGAATCTTCTGATGTGTCTAGTGACTCTGCTTGTGCCAATAAAAAT
AAGGCAGAAAAGAATGAAGGGGCAGAATGTCATTTGGAATTGAAGAATACTGTGGATATTGTTGATAAAC
CTGAGAACTCACCTCAGAGAAATGAGTTGGAAACACTGGGCTATGGTGAGGACACGGAGTCTAATGATGC
TCGGTTACAGAGCACAGAGTTCAATAAGTCAGATTTGGAGGAAGTTGATGCTTGTGCTTTTGAACCGGAA
GCTAGCACTTTAGAAAATACTATTTGTGATGTTCTTGACCAAAATTCAAAGCAATTGAATATTACTCAAA
GTATTAAAATGGAAACAGCCAATCTTCAGGATGATAGAAGTGGTTTAGAGCCCAAAAACATAAAACCCAA
ACACATAAAATCTGTAACTCATTCTAAACAAAGCATGACCACAGAGACACCCAGAAAAACTGTGGCAGCA
AAGCATGAAGTAGGTCATAGCAAAACTAAATCTAATGTCAAGGCTGTGAAGCGAAATTCTGGTGAGCCGG
AACCCCAGCCTGATTCTCAGAGGCCAGTCAAAGTGAGAAAAAAACAAGGTGATAAGGTTTGGAAGAGTCA
GAGTTGTAATTCTGGAGTTAAATCTGTGAAAAGCCAAGCTCATTCTGTATTGAAAAGAATGCCCCAGGAT
CAAAACACAATGCAGATTTCCAAACCTTTAACTCATCCTCATAGTGATAAGCTTCATGGTCACTCTGGCT
TCTCTAAGGAGCCTCCCCATCCTGTACAAACTGGACACTTGGTGCATTCCAGTCAAAAACAGAGCCAGAA
GCCTCAGCAGCAGGCAGCTGTGGGGAAGGGCAGTAGCCATGTGAAGGATGAGCATGACCATCCAGTCAGT
GAGCATCTTAAGGAGGACGATAAACTGAAGCCAAGAAAACCTGATAGGAACCTGCAGCCTCGCCAAAGGA
GAAGCAGCCGAAGTTTTTCTCTGGATGAGCCTCCATTGTTCATCCCAGACAACATAGCTACTGTAAAAAA
AGAAGGGTCAGATCAGACCACCTCAATTGAAAGCAAATATATGTGGACTCCAAGCAAGCAATGTGGGTTT
TGCAAAAAACCACATGGCAACAGGTTTATGGTCGGCTGTGGGAGATGTGATGACTGGTTTCATGGAGACT
GTGTTGGATTAAGTCTTTCTCAAGCACAGCAAATGGGAGAGGAAGACAAAGAATATGTTTGTGTAAGGTG
CTGTGCTGAAGAAGATAAAAAGACTGACATACTAGACACAGAGATTTTTGAAGCCCAAGCTCCCATCGAA
GCCCACAGCGAAGATAAAAGGATGGAGTGTGGAAAGCTGACATCATCGAAGCACGCAGTCACTGACGATA
AACACAGACACTCAGATGACCCTGGGAAGCACAAGGTCAAAATTTTAAAACGGGAGTCTGGTGAGGGAAA
AACTTCCTCTGACAGTAGAGATAATGAAATTAAAAAATGGCAGCTAGCCCCTCTTCGCAAGTTGAGCCAA
CCACATTTACCTCGGAGATCATCAGAAGAAAAAAGTGAAAAAATAGCAAAGGAATCTACAGCTCTTGCCT
CTACAGGAGAGAGAGTGGCGAGATCAGGTACTCATGAGAAGCAAGAGACAAAAAAGAAGAAAATGGAAAA
GGGTGGACCTAATGTGCACCCGCCTGCTGCTACTTCCAAGCCTTCTGCAGATCAGATCAGACAGAGTGTC
CGACATTCTCTCAAAGATATTCTTATGAAAAGACTTACAGATTCAAACCTGAAGATCCCAGAGGAAAAGG
CAGCAAAGGTTGCCACAAAAATTGAAAAAGAACTTTTCTCTTTTTTTCGGGACACGGATGCCAAGTATAA
GAATAAATATAGAAGCTTGATGTTTAATCTAAAAGATCCTAAAAACAATATATTATTTAAGAAAGTTCTA
AAAGGAGAAGTAACCCCTGATCATCTTATAAGAATGAGCCCAGAAGAACTAGCCTCCAAAGAGCTGGCTG
CGTGGAGACGAAGGGAGAACAGACACACCATAGAGATGATTGAGAAGGAACAGAGAGAAGTGGAAAGACG
ACCAATCACGAAAATAACTCACAAAGGTGAGATAGAAATCGAGAGTGACGCCCCGATGAAGGAGCAGGAA
GCAGCCATCGAGATCCAGGAACCGTCAGCTAATAAGTCAATGGAGAAGCCAGATGTGTCTGAGAAACAAA
AAGAAGAGGTTGACTCCACATCTAAAGACACCACTAGTCAACACAGACAGCATCTCTTTGACCTGAACTG
CAAAATATGCATAGGTCGAATGGCACCACCTATAGATGATCTTTCTCCAAAAACTGTGAAAGTTGTTGTA
GGAGGAGCCCGGAAACACTCAGACAACGAAGCAGAGAGTCTAGCAGATGCGTTGTCTTCAACTACGAATA
TTCTGACCTCTGACCTCTTTGAGGAGGAAAAGCAAGAATCTCCCAAGTCAACGTTTTCCCCCACTCCACG
GCCAGAGATGCCTGGAACTGTGGAAGTTGAGTCAACCTTTCTGGCTCGATTGAACTTCATCTGGAAAGGT
TTTATCAATATGCCCTCTGTGGCAAAGTTTGTTACCAAAGCCTACCCCGTGTCTGGATCCCCTGAGTACT
TGACAGAGGACCTACCAGACAGCATTCAAGTAGGTGGCAGGATATCGCCTCAGACAGTTTGGGATTATGT
GGAAAAAATAAAAGCATCAGGCACCAAGGAAATCTGTGTGGTTCGCTTCACACCAGTAACTGAAGAAGAT
CAGATTTCTTACACTTTGCTGTTTGCGTACTTCAGTAGCAGAAAGCGCTATGGTGTGGCTGCTAACAACA
TGAAGCAGGTTAAAGACATGTACCTCATTCCATTGGGCGCTGCAGATAAAATCCCACACCCTCTTGTGCC
TTTTGATGGACCTGGACTTGAGCTGCACAGACCTAATCTGTTGTTGGGCCTGATTATCCGTCAGAAGCTG
AAGCGGCCGCACAGCGCTAGTGCAGGCCCCAGTCACACAGGCGAGACTCCTGAGAGCGCCCCAATAGTGT
TGCCCCCCGACAAGAAAGGTAAAATGGAGTCATGCACAGAGGAAGCAGCAGAGGAAGAGAGTGACTTTTT
CAATTCCTTTACAACTGTGTTACACAAGCAGAGAAATAAGCCCTCACAGCCTCTTCAGGAAGACCTGCCA
ACAGCAGCTGAACCTCTGATGGAAGTCACCAAGCAGGAGCCACCAAAACCCTTAAGGTTCCTTCCTGGGG
TCCTGATTGGCTGGGACAATCAACCTTCTACTCTGGAATTAGCAAATAAGCCTCTTCCTGTGGATGACAT
ACTCCAAAGCCTTTTGGGCACCACTGGTCAAGTATATGAGCAGGCTCAGCCACTTGTAGAACAAAGCACT
CTTAAAGAAATTCCTTTTATAAATGATCAAGCTAACCCAAAAGTAGAGAAAATAGATAAAGTGGAGGTGA
CTGAAGGTGACGCCAAGGAGATAAAAGTTAAAGCAGAAAATATTTCAGTGTCTACAAGTAAAAACTCAGG
AGAAGAGACTTCATCGGTAGGTTCATCTTCCATTTCTCCAGGGCCTTTGGCAAGTCTCAGTCTGAGAGGG
AAACCACCAGATGTTTCTACAGAAGCATTCTTAACAAATTTATCAATTCCCTCAAAACAAGAGGAAAGTG
TGGAAAACAAAGAGAGAACATTAAAAAGACTGCTGCTCCAAGATCAAGAGAATAGTTTGCAAGACAATAG
GACTTCAAGTGACTCTCCCTGCTGGCCTGGCACTGGGAAGGGAGGCATGGATGGGGATGGGAGCGGGAGC
GGGAGCGGGAGCGGGAGCGGCAGTGAGGGTCCAGTGGCTAACACAAGAGCCCCACAGTTTATCAACCTGA
AAAGGGACCCTAGGCAAGCAGCAGGACGAAGTCAGCAGACAGCTTCTGAAAGCAAGGATGCAGAGAGCTG
CAGAAATGGAGACAAGCATGCTGCGTCTGCTCCACCACACAACAAAGAGCCCTTAGCAGAGGCTGTCGGT
GGAGAGGGAAAGCTGCCTTCGCAGGAGAAGAGCTCATGTGTAGAGCAGAACGACGATTCGGAAGCTGCAC
CAAACTCATCCTCAGTAGAAAACTTAAATTCGTCACAAGCAGAACAAGCCAATCCTTCACAAGAGGATGT
TTTAACACAAAATATTGAAACGGTCCACCCGTTTAGAAGAGGATCGGCTCCAACATCATCTCGTTTTGAA
GGTGGAAATACCTGCCAATCAGAATTTCCGTCTAAAAGCGTTAGCTTTACTTGCAGGAGTAGCAGCCCTC
GCGCGAGTACAAACTTTTCACCTATGAGGCCACAGCAGCCCAATCTCCAGCACCTCAAGTCCAGTCCTCC
TGGATTCCCATTTCCAGGACCCCAAAACTTCCCTCCGCAAAATATGTTTGGATTCCCACCACATTTGTCA
CCTCCGTTACTTCCCCCTCCAGGCTTCGGCTTCCCTCAAAATCCCCCCATGGTTCCTTGGCCACCTGTTC
ATGTCCCAGGCCAACCACAACGCATGATGGGGCCCCTTTCACAAGCATCACGGTACATGGGCCCACAAAA
TTTTTATCAGGTAAAAGATATTCGGAGACCAGAAAGGCGCCATAGTGACCCATGGGGTAGGCAAGACCAA
CAACAACCAGATAGGCCATTTAATAGGGGTAAAGGGGACCGACAGAGATTTTACAGTGATTCGCACCACT
TGAAAAGAGAGCGTCACGACAAGGATTGGGAGCAGGAATCCGAAAGGCACAGACACAGAGACAGAAGCCA
AGAAAGGGACAGAGACAGAAAAAGCAAAGAGGAAGCAGCGGCACACAAAGACAAGGAGAGACCGCGGCTC
TCACACGGCGACCGGGCACCAGATGGGAAAGCAAGCAGAGATGGTAAGAGTGCAGACAAGAAACCGGACA
GGCCTAAAGGCGAAGACCACGAAAAGGAGAAAGAGAGAGACAAGAGCAAGCACAAAGAAGGGGAGAAGGA
CAGAGAGCGGTACCACAAAGACAGGGACCACACCGACAGAGTGAAAAGCAAAAGGTGA

Translation (2025 aa):
MDIVDTFNHLIPTEHLDDALFLGSNLENEVCEDFSTSQNVLEDSLKNMLSDKDPMLGSASNQFCLPVLDS
NDPNFQMPCSTVVGLDDIMDEGVVKESGNDTIDEEELILPNRSLRDRVEDNSVRSPRKSPRLMAQEQVRS
LRQSTIAKRSNAATLSTKKPSGKTLSTSKVGVKPAERCQGKEEVYASLKSEHPKESRRSGRHAEQMDVAP
EVSASSVDSSVSSCAGMKEEAEFDPKHACNNQGEVNVPSPELDCPLLSETSASVEEKNIEALMECKAKTN
SSPLFKFPVREDEQSDLVSGELNDTIEGKDAGGKPDQESEEVKFPCEGDQTAEEPESSDVSSDSACANKN
KAEKNEGAECHLELKNTVDIVDKPENSPQRNELETLGYGEDTESNDARLQSTEFNKSDLEEVDACAFEPE
ASTLENTICDVLDQNSKQLNITQSIKMETANLQDDRSGLEPKNIKPKHIKSVTHSKQSMTTETPRKTVAA
KHEVGHSKTKSNVKAVKRNSGEPEPQPDSQRPVKVRKKQGDKVWKSQSCNSGVKSVKSQAHSVLKRMPQD
QNTMQISKPLTHPHSDKLHGHSGFSKEPPHPVQTGHLVHSSQKQSQKPQQQAAVGKGSSHVKDEHDHPVS
EHLKEDDKLKPRKPDRNLQPRQRRSSRSFSLDEPPLFIPDNIATVKKEGSDQTTSIESKYMWTPSKQCGF
CKKPHGNRFMVGCGRCDDWFHGDCVGLSLSQAQQMGEEDKEYVCVRCCAEEDKKTDILDTEIFEAQAPIE
AHSEDKRMECGKLTSSKHAVTDDKHRHSDDPGKHKVKILKRESGEGKTSSDSRDNEIKKWQLAPLRKLSQ
PHLPRRSSEEKSEKIAKESTALASTGERVARSGTHEKQETKKKKMEKGGPNVHPPAATSKPSADQIRQSV
RHSLKDILMKRLTDSNLKIPEEKAAKVATKIEKELFSFFRDTDAKYKNKYRSLMFNLKDPKNNILFKKVL
KGEVTPDHLIRMSPEELASKELAAWRRRENRHTIEMIEKEQREVERRPITKITHKGEIEIESDAPMKEQE
AAIEIQEPSANKSMEKPDVSEKQKEEVDSTSKDTTSQHRQHLFDLNCKICIGRMAPPIDDLSPKTVKVVV
GGARKHSDNEAESLADALSSTTNILTSDLFEEEKQESPKSTFSPTPRPEMPGTVEVESTFLARLNFIWKG
FINMPSVAKFVTKAYPVSGSPEYLTEDLPDSIQVGGRISPQTVWDYVEKIKASGTKEICVVRFTPVTEED
QISYTLLFAYFSSRKRYGVAANNMKQVKDMYLIPLGAADKIPHPLVPFDGPGLELHRPNLLLGLIIRQKL
KRPHSASAGPSHTGETPESAPIVLPPDKKGKMESCTEEAAEEESDFFNSFTTVLHKQRNKPSQPLQEDLP
TAAEPLMEVTKQEPPKPLRFLPGVLIGWDNQPSTLELANKPLPVDDILQSLLGTTGQVYEQAQPLVEQST
LKEIPFINDQANPKVEKIDKVEVTEGDAKEIKVKAENISVSTSKNSGEETSSVGSSSISPGPLASLSLRG
KPPDVSTEAFLTNLSIPSKQEESVENKERTLKRLLLQDQENSLQDNRTSSDSPCWPGTGKGGMDGDGSGS
GSGSGSGSEGPVANTRAPQFINLKRDPRQAAGRSQQTASESKDAESCRNGDKHAASAPPHNKEPLAEAVG
GEGKLPSQEKSSCVEQNDDSEAAPNSSSVENLNSSQAEQANPSQEDVLTQNIETVHPFRRGSAPTSSRFE
GGNTCQSEFPSKSVSFTCRSSSPRASTNFSPMRPQQPNLQHLKSSPPGFPFPGPQNFPPQNMFGFPPHLS
PPLLPPPGFGFPQNPPMVPWPPVHVPGQPQRMMGPLSQASRYMGPQNFYQVKDIRRPERRHSDPWGRQDQ
QQPDRPFNRGKGDRQRFYSDSHHLKRERHDKDWEQESERHRHRDRSQERDRDRKSKEEAAAHKDKERPRL
SHGDRAPDGKASRDGKSADKKPDRPKGEDHEKEKERDKSKHKEGEKDRERYHKDRDHTDRVKSKR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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