NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS50005.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50005.1 Public Mus musculus 17 Zfp945 23 108 98 CCDS HistoryNCBI Gene:240041Re-query CCDS DB by CCDS ID:50005.1Re-query CCDS DB by GeneID:240041See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50005.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000088696.12 ENSMUSP00000086074.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000088696.12Link to Ensembl Protein Viewer:ENSMUSP00000086074.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000088696Re-query CCDS DB by Protein ID:ENSMUSP00000086074
Original member Current member NCBI NM_001110254.1 NP_001103724.1 Accepted alive Link to Nucleotide Sequence:NM_001110254.1Link to Protein Sequence:NP_001103724.1Re-query CCDS DB by Nucleotide ID:NM_001110254Re-query CCDS DB by Protein ID:NP_001103724Link to BLAST:NP_001103724.1

Chromosomal Locations for CCDS 50005.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 22850602 22852766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 22857250 22857376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 22861506 22861561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 22865247 22865283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2385 nt):
ATGGTGAAGAGAGAGGAGACTATAGTAAAGAATCCAGAAACTTGGAAAAGAGCAATAAGAAGAATGACAG
CTTCTTTGGTAAATGCTCCCCAGGAACTGTTAACATTCAAGGAAGTGGCTGTTGACTTCTCACAGGAGGA
ATGGGAATGTCTTGACTGTGCTCAGAGGGCATTGTACATGGATGTGATGCTAGAGAATTACAACAATCTA
CTCTTTGTGGAGAATAATCATCATGTGTGTGTCAAACATGATGAAGTCTTGGGCCAAGGCTCAAAGTATA
GTGCCCCTGAGCATGTGAATATTCAAGAGAAGTCTAATAAATGGAAGGAATGTGGCAAAATGATTCATGA
ATCCTCCAAAAGTACACCTTATCAAACCAACAACAGAGATGCCTCCATTGAATCATCAAACAGACACAAA
ACTGAGAATGCCAGGGAACCATGCAAGTATAAGGACTGTGTGAATGGCTTAAATTTGTATCCCATCACTT
GTCACAATCAAACAGTGTACCTAGAAATAAAAGAACATACCAAAACACTGTATGATGAAGCTTTTCTCTC
TAAATATAAACTCATGCTAAAAGGAAACAATAGTGGAATGAAATCACACAAGTGCAGGAAGTCTGGAAAA
TTCTTCACGATGACCTCAAGCCTGAGTGGGCATCCGAGAGATCATGCTAGAGAGAAGCCCTATCAATGTA
CAAAGTGTAGTAAATCCTTTCTGCATTTGTCACACCTCCAACTGCATTACAAAATCCATTTTGGAGGATA
TCCCTACAAATGTACAGAATGCGGTAAGTGCTTTTATCATGCATCAGGCTTTGAAAGACATTGCAGAATC
CATGCTACAAAGAATACTTACAAATGTAGTTTTTGTAGCAAATCCTTTATCTGCTGCTCAGGTCTTAGAA
AACATCAGAAAATTCATGAAGAAAACAGGCTTTTTGAATGTAACCAAGATACTAGATCATTCTGTACATT
TTCCTACCGTGAATGCCATTACCGTGCTGATATAAGAAAGAAATGTTACAGATGTAAAGAATGTGGCAAA
TCCCTTTCTACATCCTCAGGACTTAAAATACATCAGAGAATTCATACTGGAGAGAGACCTTACAAATGTG
GTGACTGTGACAAATCTTTTACCCAGAAGAGCAATCTTAGAATGCATCAGAAAATTCATACAGGAGAGAA
TACTTACAAATGCAGTGAATGTGACAAATGCTTTACCCAGAGATGCCTTCTTAGAACTCATCAGAGAATT
CATTCAGGAGAAAAACCTTACAAATGTAGTGAATGTGGCAAGGCCTTTGCTGGTGGCTCATATCTTAGAA
GTCATCAGAGAATTCATTCAGAAAAGAAGCCTTACAAATGCAGTGACTGTGACAAATCCTTCCACCGGAA
AGACCACCTTAGAATTCATCAGAGAATTCATACAGGAGAGAAACCTTATAAATGTAGTGAATGTGACAAA
TGCTTTACCCAGAAAGGCAGTGTTAGAATTCATCAGAGAATTCATACAGGAGAGAAACCTTACAAATGTA
GTAAATGTGATAAATCTTTTACCAAGAAAGACTGTCTTAAAATTCATCAGATAATTCATACAGGCGAAGA
ACCTTACAAATGTAGTGAATGTGACACATCCTTTAACCGGAAAGACCATCTTAGAACTCATCAGAGATTT
CACACAGGAGAGAGAATTTACAAATGTAGTGAATGTGATGAATCCTTTACCCAGAAAATTAATCTAAGAA
TTCATCAGAAAATTCATACAGGAGACAACTCTTACAAATGTAGTGGATGTGACAAATCCTTTAACCGGAG
AAACCATCTTAGAACTCATGAGAGAATTCATGCCGGAGAAAAGCCTTACAATTGTAGGGAATTTGAAAAT
TCCTTTATCCAGACTGGCTCTCTTAGAATTCATCAGAGACTTCATTCAAGAAAGAAACTTTACAAATGCA
GGGAATGTGACAAATCCTTTACTAGCAGCTCATATGTCAGAATACATCAGAGAATTCATTCAGGAGAGAA
ACCTTACAAATGTAGTGAGTGTGGCAAATGCTTCACTAGTGGCTCATATCTTAGAATGCACCAAAGAATT
CATACAGGAGACAAACCTTACAAATGTAGTGACTGTGATAAATGCTTTACTCAGAAATGCAGTCTTAGAA
TTCACCAGAGAAGTCATACAGGAGAGAAACCTTACAAATGTGGTAATTGCGACAGATCTTTTACAAGTGG
CTCATATCTTAGAATTCATCAGAGAATTCATAGAGGTGAGAAACCTCATAAATGTAGTGAATGTGACAAA
TCCTTTACCCAGAAAGGCTATCTTAGAATTCATCAGAGAATTCATAAAGGAGAAAAATCTCACAAAGGTA
GTTAG

Translation (794 aa):
MVKREETIVKNPETWKRAIRRMTASLVNAPQELLTFKEVAVDFSQEEWECLDCAQRALYMDVMLENYNNL
LFVENNHHVCVKHDEVLGQGSKYSAPEHVNIQEKSNKWKECGKMIHESSKSTPYQTNNRDASIESSNRHK
TENAREPCKYKDCVNGLNLYPITCHNQTVYLEIKEHTKTLYDEAFLSKYKLMLKGNNSGMKSHKCRKSGK
FFTMTSSLSGHPRDHAREKPYQCTKCSKSFLHLSHLQLHYKIHFGGYPYKCTECGKCFYHASGFERHCRI
HATKNTYKCSFCSKSFICCSGLRKHQKIHEENRLFECNQDTRSFCTFSYRECHYRADIRKKCYRCKECGK
SLSTSSGLKIHQRIHTGERPYKCGDCDKSFTQKSNLRMHQKIHTGENTYKCSECDKCFTQRCLLRTHQRI
HSGEKPYKCSECGKAFAGGSYLRSHQRIHSEKKPYKCSDCDKSFHRKDHLRIHQRIHTGEKPYKCSECDK
CFTQKGSVRIHQRIHTGEKPYKCSKCDKSFTKKDCLKIHQIIHTGEEPYKCSECDTSFNRKDHLRTHQRF
HTGERIYKCSECDESFTQKINLRIHQKIHTGDNSYKCSGCDKSFNRRNHLRTHERIHAGEKPYNCREFEN
SFIQTGSLRIHQRLHSRKKLYKCRECDKSFTSSSYVRIHQRIHSGEKPYKCSECGKCFTSGSYLRMHQRI
HTGDKPYKCSDCDKCFTQKCSLRIHQRSHTGEKPYKCGNCDRSFTSGSYLRIHQRIHRGEKPHKCSECDK
SFTQKGYLRIHQRIHKGEKSHKGS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH