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Report for CCDS17257.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17257.1 Public Mus musculus 3 Dnajc5b 23 108 98 CCDS HistoryNCBI Gene:66326Re-query CCDS DB by CCDS ID:17257.1Re-query CCDS DB by GeneID:66326See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17257.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029132.10 ENSMUSP00000029132.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029132.10Link to Ensembl Protein Viewer:ENSMUSP00000029132.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000029132Re-query CCDS DB by Protein ID:ENSMUSP00000029132
Original member Current member EBI ENSMUST00000118968.7 ENSMUSP00000112849.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000118968.7Link to Ensembl Protein Viewer:ENSMUSP00000112849.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000118968Re-query CCDS DB by Protein ID:ENSMUSP00000112849
Original member Current member EBI ENSMUST00000118735.7 ENSMUSP00000113414.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000118735.7Link to Ensembl Protein Viewer:ENSMUSP00000113414.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000118735Re-query CCDS DB by Protein ID:ENSMUSP00000113414
Original member Current member EBI ENSMUST00000165693.1 ENSMUSP00000127515.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000165693.1Link to Ensembl Protein Viewer:ENSMUSP00000127515.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000165693Re-query CCDS DB by Protein ID:ENSMUSP00000127515
Original member NCBI NM_001163536.1 NP_001157008.1 Updated not alive Link to Nucleotide Sequence:NM_001163536.1Link to Protein Sequence:NP_001157008.1Re-query CCDS DB by Nucleotide ID:NM_001163536Re-query CCDS DB by Protein ID:NP_001157008
Current member NCBI NM_001163536.2 NP_001157008.1 Accepted alive Link to Nucleotide Sequence:NM_001163536.2Link to Protein Sequence:NP_001157008.1Re-query CCDS DB by Nucleotide ID:NM_001163536Re-query CCDS DB by Protein ID:NP_001157008Link to BLAST:NP_001157008.1
Original member NCBI NM_001163537.1 NP_001157009.1 Updated not alive Link to Nucleotide Sequence:NM_001163537.1Link to Protein Sequence:NP_001157009.1Re-query CCDS DB by Nucleotide ID:NM_001163537Re-query CCDS DB by Protein ID:NP_001157009
Current member NCBI NM_001163537.2 NP_001157009.1 Accepted alive Link to Nucleotide Sequence:NM_001163537.2Link to Protein Sequence:NP_001157009.1Re-query CCDS DB by Nucleotide ID:NM_001163537Re-query CCDS DB by Protein ID:NP_001157009Link to BLAST:NP_001157009.1
Original member NCBI NM_025489.3 NP_079765.3 Updated not alive Link to Nucleotide Sequence:NM_025489.3Link to Protein Sequence:NP_079765.3Re-query CCDS DB by Nucleotide ID:NM_025489Re-query CCDS DB by Protein ID:NP_079765
Current member NCBI NM_025489.4 NP_079765.3 Accepted alive Link to Nucleotide Sequence:NM_025489.4Link to Protein Sequence:NP_079765.3Re-query CCDS DB by Nucleotide ID:NM_025489Re-query CCDS DB by Protein ID:NP_079765Link to BLAST:NP_079765.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157008.1 199 Q9CQ94 199 100% 0 0
NP_001157009.1 199 Q9CQ94 199 100% 0 0
NP_079765.3 199 Q9CQ94 199 100% 0 0

Chromosomal Locations for CCDS 17257.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 19546741 19546859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 19574663 19574876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 19578948 19579119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 19610545 19610639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (600 nt):
ATGGCATGTAACGCACCCAACCAAAGACAGCGGACTTTGTCAACATCAGGAGAAAGTCTATATGAAATTC
TTGGTCTGCATAAGGGAGCATCATGTGAAGAAATTAAGAAAACCTACAGAAAATTAGCCCTGCGACACCA
TCCAGACAAGAATCCAGATGACCCATCTGCTGCTGAGAAGTTTAAAGAAATCAACAACGCCCACACAATC
CTCACCGACACCTCAAAGAGAAACATATATGACAAGTATGGATCGCTGGGACTCTACGTGGCTGAACAAT
TTGGAGATGAAAACGTTAACACATACTTCATGTTGTCAAGCTGGTGGGCAAAGACCCTGTTCATCATCAT
TGGCCTCTTGACCGGCTGCTATTTTTGTTGCTGCCTTTGCTGCTGCTGCAACTGTTGTTGTGGACATTGT
CGGCCCAAATCATCGACACCAGAAGAGGAGTTCTATGTGTCACCAGAGGACCTTGAGGAGCAGATCAGAA
CTGACATGGAGAAAGATATGGACTTTCCAGTTGTTCTCCAGCCTACAAATACAAATGAGAAAACACAGCT
AATCAGAGAAGGATCTCGAAGTTACTGCACAGACTCTTAA

Translation (199 aa):
MACNAPNQRQRTLSTSGESLYEILGLHKGASCEEIKKTYRKLALRHHPDKNPDDPSAAEKFKEINNAHTI
LTDTSKRNIYDKYGSLGLYVAEQFGDENVNTYFMLSSWWAKTLFIIIGLLTGCYFCCCLCCCCNCCCGHC
RPKSSTPEEEFYVSPEDLEEQIRTDMEKDMDFPVVLQPTNTNEKTQLIREGSRSYCTDS


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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